Analysis of interatomic Contacts of Structural Units in PDB entry:
8KCW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8KCW entry

There are 2 chains in PDB entry 8KCW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 44PRO 825
C
 ARG 44PRO 825
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 38 helices in PDB entry 8KCW. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
251 253Right-handed 310
Helix 2
AA2
A
302 316Right-handed alpha
Helix 3
AA3
A
318 332Right-handed alpha
Helix 4
AA4
A
445 473Right-handed alpha
Helix 5
AA5
A
482 486Right-handed 310
Helix 6
AA6
A
494 500Right-handed alpha
Helix 7
AA7
A
501 527Right-handed alpha
Helix 8
AA8
A
542 563Right-handed alpha
Helix 9
AA9
A
570 575Right-handed 310
Helix 10
AB1
A
576 592Right-handed alpha
Helix 11
AB2
A
600 620Right-handed alpha
Helix 12
AB3
A
625 648Right-handed alpha
Helix 13
AB4
A
682 705Right-handed alpha
Helix 14
AB5
A
708 735Right-handed alpha
Helix 15
AB6
A
740 763Right-handed alpha
Helix 16
AB7
A
771 776Right-handed alpha
Helix 17
AB8
A
777 779Right-handed 310
Helix 18
AB9
A
789 812Right-handed alpha
Helix 19
AC1
A
813 815Right-handed 310
Helix 20
AC2
C
251 253Right-handed 310
Helix 21
AC3
C
302 316Right-handed alpha
Helix 22
AC4
C
318 332Right-handed alpha
Helix 23
AC5
C
445 473Right-handed alpha
Helix 24
AC6
C
482 486Right-handed 310
Helix 25
AC7
C
494 500Right-handed alpha
Helix 26
AC8
C
501 527Right-handed alpha
Helix 27
AC9
C
542 563Right-handed alpha
Helix 28
AD1
C
570 575Right-handed 310
Helix 29
AD2
C
576 592Right-handed alpha
Helix 30
AD3
C
600 620Right-handed alpha
Helix 31
AD4
C
625 648Right-handed alpha
Helix 32
AD5
C
682 705Right-handed alpha
Helix 33
AD6
C
708 735Right-handed alpha
Helix 34
AD7
C
740 763Right-handed alpha
Helix 35
AD8
C
771 776Right-handed alpha
Helix 36
AD9
C
777 779Right-handed 310
Helix 37
AE1
C
789 812Right-handed alpha
Helix 38
AE2
C
813 815Right-handed 310
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There are 10 sheets in PDB entry 8KCW. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
51 56first strand
Strand 2
A
157 166anti-parallel
Strand 3
A
77 83anti-parallel
Strand 4
A
124 128anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
62 70first strand
Strand 2
A
141 151anti-parallel
Strand 3
A
93 98anti-parallel
Strand 4
A
103 108anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
110 114first strand
Strand 2
A
118 122anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
170 171first strand
Strand 2
A
187 192parallel
Strand 3
A
257 264anti-parallel
Strand 4
A
213 218anti-parallel
Strand 5
A
236 240anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
177 181first strand
Strand 2
A
291 299anti-parallel
Strand 3
A
199 205anti-parallel
Strand 4
A
243 249anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
51 56first strand
Strand 2
C
157 166anti-parallel
Strand 3
C
77 83anti-parallel
Strand 4
C
124 128anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
62 70first strand
Strand 2
C
141 151anti-parallel
Strand 3
C
93 98anti-parallel
Strand 4
C
103 108anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
110 114first strand
Strand 2
C
118 122anti-parallel
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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
170 171first strand
Strand 2
C
187 192parallel
Strand 3
C
257 264anti-parallel
Strand 4
C
213 218anti-parallel
Strand 5
C
236 240anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
177 181first strand
Strand 2
C
291 299anti-parallel
Strand 3
C
199 205anti-parallel
Strand 4
C
243 249anti-parallel
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