Analysis of interatomic Contacts of Structural Units in PDB entry:
8KCZ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8KCZ entry

There is 1 chain in PDB entry 8KCZ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 6LYS 528
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 19 helices in PDB entry 8KCZ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
13 18Right-handed alpha
Helix 2
AA2
A
34 47Right-handed alpha
Helix 3
AA3
A
61 67Right-handed alpha
Helix 4
AA4
A
76 82Right-handed alpha
Helix 5
AA5
A
87 100Right-handed alpha
Helix 6
AA6
A
103 124Right-handed alpha
Helix 7
AA7
A
156 167Right-handed 310
Helix 8
AA8
A
170 175Right-handed alpha
Helix 9
AA9
A
186 202Right-handed alpha
Helix 10
AB1
A
253 261Right-handed alpha
Helix 11
AB2
A
265 269Right-handed 310
Helix 12
AB3
A
278 287Right-handed alpha
Helix 13
AB4
A
335 347Right-handed alpha
Helix 14
AB5
A
376 384Right-handed alpha
Helix 15
AB6
A
391 400Right-handed alpha
Helix 16
AB7
A
402 420Right-handed alpha
Helix 17
AB8
A
430 436Right-handed alpha
Helix 18
AB9
A
494 497Right-handed 310
Helix 19
AC1
A
509 528Right-handed alpha
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There are 6 sheets in PDB entry 8KCZ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
11 12first strand
Strand 2
A
212 219parallel
Strand 3
A
222 230anti-parallel
Strand 4
A
233 245anti-parallel
Strand 5
A
24 31parallel
Strand 6
A
51 54parallel
Strand 7
A
205 208parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
11 12first strand
Strand 2
A
212 219parallel
Strand 3
A
222 230anti-parallel
Strand 4
A
233 245anti-parallel
Strand 5
A
486 492parallel
Strand 6
A
478 480anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
129 131first strand
Strand 2
A
150 152anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
291 292first strand
Strand 2
A
470 471anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
320 322first strand
Strand 2
A
355 359anti-parallel
Strand 3
A
455 467anti-parallel
Strand 4
A
297 304anti-parallel
Strand 5
A
310 314anti-parallel
Strand 6
A
370 372anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
320 322first strand
Strand 2
A
355 359anti-parallel
Strand 3
A
455 467anti-parallel
Strand 4
A
386 389anti-parallel
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