Analysis of interatomic Contacts of Structural Units in PDB entry:
8KD7

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8KD7 entry

There are 17 chains in PDB entry 8KD7 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ARG 19	VAL 426
B	ASN 663	THR 1323
D	HIS 80	GLY 400
E	LYS 33	VAL 561
F	GLU 270	VAL 364
G	GLN 268	LYS 563
O	ALA 31	VAL 35
O	LYS 37	ARG 134
P	LEU 22	PHE 100
Q	ARG 11	PRO 117
R	THR 29	SER 120
S	LYS 37	GLU 133
T	LEU 22	PHE 100
U	ARG 11	PRO 117
V	LYS 28	THR 119
X	T -79	G 73
Y	T -72	A 79

There are 94 helices in PDB entry 8KD7. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	26	30	Right-handed 310
Helix 2	AA2	A	42	54	Right-handed alpha
Helix 3	AA3	A	56	60	Right-handed 310
Helix 4	AA4	A	79	87	Right-handed alpha
Helix 5	AA5	A	97	104	Right-handed alpha
Helix 6	AA6	A	115	137	Right-handed alpha
Helix 7	AA7	A	166	174	Right-handed alpha
Helix 8	AA8	A	191	197	Right-handed alpha
Helix 9	AA9	A	226	230	Right-handed 310
Helix 10	AB1	A	243	261	Right-handed alpha
Helix 11	AB2	A	287	300	Right-handed alpha
Helix 12	AB3	A	314	329	Right-handed alpha
Helix 13	AB4	A	365	380	Right-handed alpha
Helix 14	AB5	B	665	677	Right-handed alpha
Helix 15	AB6	B	678	694	Right-handed alpha
Helix 16	AB7	B	698	710	Right-handed alpha
Helix 17	AB8	B	714	722	Right-handed alpha
Helix 18	AB9	B	773	778	Right-handed alpha
Helix 19	AC1	B	785	791	Right-handed alpha
Helix 20	AC2	B	801	840	Right-handed alpha
Helix 21	AC3	B	843	848	Right-handed alpha
Helix 22	AC4	B	861	871	Right-handed alpha
Helix 23	AC5	B	874	886	Right-handed alpha
Helix 24	AC6	B	890	927	Right-handed alpha
Helix 25	AC7	B	934	939	Right-handed alpha
Helix 26	AC8	B	944	961	Right-handed alpha
Helix 27	AC9	B	983	999	Right-handed alpha
Helix 28	AD1	B	1003	1022	Right-handed alpha
Helix 29	AD2	B	1141	1164	Right-handed alpha
Helix 30	AD3	B	1164	1172	Right-handed alpha
Helix 31	AD4	B	1202	1216	Right-handed alpha
Helix 32	AD5	B	1220	1232	Right-handed alpha
Helix 33	AD6	B	1237	1240	Right-handed 310
Helix 34	AD7	B	1241	1255	Right-handed alpha
Helix 35	AD8	B	1259	1272	Right-handed alpha
Helix 36	AD9	B	1282	1292	Right-handed alpha
Helix 37	AE1	B	1307	1310	Right-handed 310
Helix 38	AE2	D	225	241	Right-handed alpha
Helix 39	AE3	D	254	265	Right-handed alpha
Helix 40	AE4	D	273	293	Right-handed alpha
Helix 41	AE5	D	303	314	Right-handed alpha
Helix 42	AE6	D	327	338	Right-handed alpha
Helix 43	AE7	D	348	369	Right-handed alpha
Helix 44	AE8	D	391	399	Right-handed alpha
Helix 45	AE9	E	52	57	Right-handed alpha
Helix 46	AF1	E	303	310	Right-handed alpha
Helix 47	AF2	E	321	325	Right-handed 310
Helix 48	AF3	E	326	330	Right-handed 310
Helix 49	AF4	E	342	346	Right-handed 310
Helix 50	AF5	E	354	361	Right-handed alpha
Helix 51	AF6	E	430	434	Right-handed 310
Helix 52	AF7	E	499	503	Right-handed 310
Helix 53	AF8	E	543	559	Right-handed alpha
Helix 54	AF9	F	275	290	Right-handed alpha
Helix 55	AG1	F	332	338	Right-handed alpha
Helix 56	AG2	F	339	341	Right-handed 310
Helix 57	AG3	F	348	364	Right-handed alpha
Helix 58	AG4	G	321	327	Right-handed alpha
Helix 59	AG5	G	330	334	Right-handed 310
Helix 60	AG6	G	544	563	Right-handed alpha
Helix 61	AG7	O	44	55	Right-handed alpha
Helix 62	AG8	O	63	74	Right-handed alpha
Helix 63	AG9	O	85	114	Right-handed alpha
Helix 64	AH1	O	120	131	Right-handed alpha
Helix 65	AH2	P	25	29	Right-handed 310
Helix 66	AH3	P	30	41	Right-handed alpha
Helix 67	AH4	P	49	76	Right-handed alpha
Helix 68	AH5	P	82	93	Right-handed alpha
Helix 69	AH6	Q	16	21	Right-handed alpha
Helix 70	AH7	Q	27	37	Right-handed alpha
Helix 71	AH8	Q	45	73	Right-handed alpha
Helix 72	AH9	Q	79	90	Right-handed alpha
Helix 73	AI1	Q	90	97	Right-handed alpha
Helix 74	AI2	R	34	46	Right-handed alpha
Helix 75	AI3	R	52	81	Right-handed alpha
Helix 76	AI4	R	87	99	Right-handed alpha
Helix 77	AI5	R	100	120	Right-handed alpha
Helix 78	AI6	S	44	55	Right-handed alpha
Helix 79	AI7	S	63	78	Right-handed alpha
Helix 80	AI8	S	85	114	Right-handed alpha
Helix 81	AI9	S	120	132	Right-handed alpha
Helix 82	AJ1	T	25	29	Right-handed 310
Helix 83	AJ2	T	30	41	Right-handed alpha
Helix 84	AJ3	T	49	76	Right-handed alpha
Helix 85	AJ4	T	82	93	Right-handed alpha
Helix 86	AJ5	U	16	21	Right-handed alpha
Helix 87	AJ6	U	26	37	Right-handed alpha
Helix 88	AJ7	U	45	72	Right-handed alpha
Helix 89	AJ8	U	79	90	Right-handed alpha
Helix 90	AJ9	U	90	97	Right-handed alpha
Helix 91	AK1	V	34	46	Right-handed alpha
Helix 92	AK2	V	52	81	Right-handed alpha
Helix 93	AK3	V	87	99	Right-handed alpha
Helix 94	AK4	V	101	119	Right-handed alpha

There are 19 sheets in PDB entry 8KD7. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	62	64	first strand
Strand 2	A	21	24	parallel
Strand 3	A	141	144	parallel
Strand 4	A	305	308	parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	180	185	first strand
Strand 2	A	203	210	parallel
Strand 3	A	236	238	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	756	757	first strand
Strand 2	B	782	783	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1136	1140	first strand
Strand 2	B	1301	1306	anti-parallel
Strand 3	B	1311	1315	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	244	246	first strand
Strand 2	D	387	389	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	272	274	first strand
Strand 2	E	281	283	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	365	366	first strand
Strand 2	E	372	373	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	437	438	first strand
Strand 2	E	447	448	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	520	522	first strand
Strand 2	E	540	542	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	83	84	first strand
Strand 2	P	80	81	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	118	119	first strand
Strand 2	P	45	46	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	96	98	first strand
Strand 2	U	100	102	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	42	43	first strand
Strand 2	R	85	86	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	77	78	first strand
Strand 2	R	50	51	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	100	101	first strand
Strand 2	T	96	97	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	83	84	first strand
Strand 2	T	80	81	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	118	119	first strand
Strand 2	T	45	46	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	U	42	43	first strand
Strand 2	V	85	86	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	U	77	78	first strand
Strand 2	V	50	51	parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8KD7

Analysis of interatomic Contacts of Structural Units in PDB entry:
8KD7