Analysis of interatomic Contacts of Structural Units in PDB entry:
8KDJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8KDJ entry

There are 2 chains in PDB entry 8KDJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 162LEU 213
B
 THR 51THR 507
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 29 helices in PDB entry 8KDJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
165 173Right-handed alpha
Helix 2
AA2
A
177 207Right-handed alpha
Helix 3
AA3
B
52 64Right-handed alpha
Helix 4
AA4
B
66 70Right-handed 310
Helix 5
AA5
B
71 80Right-handed alpha
Helix 6
AA6
B
81 110Right-handed alpha
Helix 7
AA7
B
115 124Right-handed alpha
Helix 8
AA8
B
125 139Right-handed alpha
Helix 9
AA9
B
139 158Right-handed alpha
Helix 10
AB1
B
159 161Right-handed 310
Helix 11
AB2
B
167 189Right-handed alpha
Helix 12
AB3
B
189 222Right-handed alpha
Helix 13
AB4
B
239 254Right-handed alpha
Helix 14
AB5
B
256 261Right-handed alpha
Helix 15
AB6
B
262 267Right-handed 310
Helix 16
AB7
B
272 298Right-handed alpha
Helix 17
AB8
B
301 306Right-handed alpha
Helix 18
AB9
B
310 320Right-handed alpha
Helix 19
AC1
B
322 325Right-handed 310
Helix 20
AC2
B
326 345Right-handed alpha
Helix 21
AC3
B
346 356Right-handed alpha
Helix 22
AC4
B
360 365Right-handed 310
Helix 23
AC5
B
373 387Right-handed alpha
Helix 24
AC6
B
388 390Right-handed 310
Helix 25
AC7
B
392 422Right-handed alpha
Helix 26
AC8
B
435 454Right-handed alpha
Helix 27
AC9
B
454 467Right-handed alpha
Helix 28
AD1
B
467 476Right-handed alpha
Helix 29
AD2
B
482 501Right-handed alpha
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There are no sheets in PDB entry 8KDJ
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il