Analysis of interatomic Contacts of Structural Units in PDB entry:
8KDL


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8KDL entry

There are 4 chains in PDB entry 8KDL (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 16SER 269
A
 GLN 271TYR 426
B
 LEU 16SER 269
B
 GLN 271ARG 427
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 38 helices in PDB entry 8KDL. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
19 27Right-handed alpha
Helix 2
AA2
A
36 48Right-handed alpha
Helix 3
AA3
A
67 75Right-handed alpha
Helix 4
AA4
A
76 78Right-handed 310
Helix 5
AA5
A
90 105Right-handed alpha
Helix 6
AA6
A
121 135Right-handed alpha
Helix 7
AA7
A
151 159Right-handed alpha
Helix 8
AA8
A
177 192Right-handed alpha
Helix 9
AA9
A
212 227Right-handed alpha
Helix 10
AB1
A
236 240Right-handed 310
Helix 11
AB2
A
248 253Right-handed alpha
Helix 12
AB3
A
254 257Right-handed 310
Helix 13
AB4
A
274 278Right-handed 310
Helix 14
AB5
A
285 294Right-handed alpha
Helix 15
AB6
A
305 317Right-handed alpha
Helix 16
AB7
A
319 347Right-handed alpha
Helix 17
AB8
A
349 351Right-handed 310
Helix 18
AB9
A
371 384Right-handed alpha
Helix 19
AC1
A
406 422Right-handed alpha
Helix 20
AC2
B
19 27Right-handed alpha
Helix 21
AC3
B
36 48Right-handed alpha
Helix 22
AC4
B
67 75Right-handed alpha
Helix 23
AC5
B
76 78Right-handed 310
Helix 24
AC6
B
90 105Right-handed alpha
Helix 25
AC7
B
121 135Right-handed alpha
Helix 26
AC8
B
151 159Right-handed alpha
Helix 27
AC9
B
177 192Right-handed alpha
Helix 28
AD1
B
212 227Right-handed alpha
Helix 29
AD2
B
236 240Right-handed 310
Helix 30
AD3
B
248 253Right-handed alpha
Helix 31
AD4
B
254 257Right-handed 310
Helix 32
AD5
B
274 278Right-handed 310
Helix 33
AD6
B
285 294Right-handed alpha
Helix 34
AD7
B
305 317Right-handed alpha
Helix 35
AD8
B
319 346Right-handed alpha
Helix 36
AD9
B
349 351Right-handed 310
Helix 37
AE1
B
371 384Right-handed alpha
Helix 38
AE2
B
406 422Right-handed alpha
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There are 4 sheets in PDB entry 8KDL. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
53 55first strand
Strand 2
A
385 391parallel
Strand 3
A
397 402anti-parallel
Strand 4
A
361 364anti-parallel
Strand 5
A
353 354anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
114 118first strand
Strand 2
A
280 284anti-parallel
Strand 3
A
262 267anti-parallel
Strand 4
A
230 233parallel
Strand 5
A
194 200parallel
Strand 6
A
141 147parallel
Strand 7
A
162 167parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
53 55first strand
Strand 2
B
385 391parallel
Strand 3
B
397 402anti-parallel
Strand 4
B
361 364anti-parallel
Strand 5
B
353 354anti-parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
114 118first strand
Strand 2
B
280 284anti-parallel
Strand 3
B
262 267anti-parallel
Strand 4
B
230 233parallel
Strand 5
B
194 200parallel
Strand 6
B
141 147parallel
Strand 7
B
162 167parallel
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