Analysis of interatomic Contacts of Structural Units in PDB entry:
8KDM

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8KDM entry

There are 7 chains in PDB entry 8KDM (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	HIS 33	GLU 1132
E	GLN 1	VAL 218
D	GLU 1	ARG 213
G	GLN 1	VAL 218
F	GLU 1	ARG 213
B	HIS 33	GLU 1132
C	HIS 33	GLU 1132

There are 63 helices in PDB entry 8KDM. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	93	97	Right-handed 310
Helix 2	AA2	A	267	271	Right-handed 310
Helix 3	AA3	A	281	291	Right-handed alpha
Helix 4	AA4	A	324	330	Right-handed alpha
Helix 5	AA5	A	372	377	Right-handed alpha
Helix 6	AA6	A	604	612	Right-handed alpha
Helix 7	AA7	A	719	724	Right-handed alpha
Helix 8	AA8	A	728	736	Right-handed alpha
Helix 9	AA9	A	737	739	Right-handed 310
Helix 10	AB1	A	740	765	Right-handed alpha
Helix 11	AB2	A	798	806	Right-handed alpha
Helix 12	AB3	A	848	865	Right-handed alpha
Helix 13	AB4	A	868	873	Right-handed 310
Helix 14	AB5	A	879	892	Right-handed alpha
Helix 15	AB6	A	894	901	Right-handed alpha
Helix 16	AB7	A	901	922	Right-handed alpha
Helix 17	AB8	A	927	949	Right-handed alpha
Helix 18	AB9	A	961	966	Right-handed alpha
Helix 19	AC1	A	967	1015	Right-handed alpha
Helix 20	AC2	A	1122	1132	Right-handed alpha
Helix 21	AC3	E	194	196	Right-handed 310
Helix 22	AC4	D	123	130	Right-handed alpha
Helix 23	AC5	D	184	189	Right-handed alpha
Helix 24	AC6	G	194	196	Right-handed 310
Helix 25	AC7	F	123	128	Right-handed alpha
Helix 26	AC8	F	184	189	Right-handed alpha
Helix 27	AC9	B	93	97	Right-handed 310
Helix 28	AD1	B	267	271	Right-handed 310
Helix 29	AD2	B	281	291	Right-handed alpha
Helix 30	AD3	B	324	330	Right-handed alpha
Helix 31	AD4	B	604	612	Right-handed alpha
Helix 32	AD5	B	719	724	Right-handed alpha
Helix 33	AD6	B	728	738	Right-handed alpha
Helix 34	AD7	B	740	765	Right-handed alpha
Helix 35	AD8	B	798	806	Right-handed alpha
Helix 36	AD9	B	848	865	Right-handed alpha
Helix 37	AE1	B	868	873	Right-handed 310
Helix 38	AE2	B	879	892	Right-handed alpha
Helix 39	AE3	B	894	901	Right-handed alpha
Helix 40	AE4	B	901	922	Right-handed alpha
Helix 41	AE5	B	927	949	Right-handed alpha
Helix 42	AE6	B	961	966	Right-handed alpha
Helix 43	AE7	B	967	1015	Right-handed alpha
Helix 44	AE8	B	1122	1132	Right-handed alpha
Helix 45	AE9	C	267	271	Right-handed 310
Helix 46	AF1	C	281	290	Right-handed alpha
Helix 47	AF2	C	325	330	Right-handed alpha
Helix 48	AF3	C	370	374	Right-handed 310
Helix 49	AF4	C	604	612	Right-handed alpha
Helix 50	AF5	C	719	724	Right-handed alpha
Helix 51	AF6	C	728	736	Right-handed alpha
Helix 52	AF7	C	737	739	Right-handed 310
Helix 53	AF8	C	740	765	Right-handed alpha
Helix 54	AF9	C	798	806	Right-handed alpha
Helix 55	AG1	C	815	819	Right-handed 310
Helix 56	AG2	C	848	865	Right-handed alpha
Helix 57	AG3	C	868	873	Right-handed 310
Helix 58	AG4	C	879	892	Right-handed alpha
Helix 59	AG5	C	894	901	Right-handed alpha
Helix 60	AG6	C	901	922	Right-handed alpha
Helix 61	AG7	C	927	947	Right-handed alpha
Helix 62	AG8	C	967	1015	Right-handed alpha
Helix 63	AG9	C	1122	1131	Right-handed alpha

There are 66 sheets in PDB entry 8KDM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1, AF2, AF3, AF4, AF5, AF6, AF7, AF8, AF9, AG1, AG2, AG3, AG4, AG5, AG6, AG7, AG8, AG9, AH1, AH2, AH3,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	51	55	first strand
Strand 2	A	262	266	anti-parallel
Strand 3	A	275	277	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	89	91	first strand
Strand 2	A	183	189	anti-parallel
Strand 3	A	194	200	anti-parallel
Strand 4	A	217	220	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	163	166	first strand
Strand 2	A	122	126	anti-parallel
Strand 3	A	114	118	anti-parallel
Strand 4	A	100	104	anti-parallel
Strand 5	A	230	232	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	298	305	first strand
Strand 2	A	579	585	anti-parallel
Strand 3	A	595	597	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	312	315	first strand
Strand 2	A	524	529	parallel
Strand 3	A	532	538	anti-parallel
Strand 4	A	573	574	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	365	367	first strand
Strand 2	A	418	424	anti-parallel
Strand 3	A	494	500	anti-parallel
Strand 4	A	387	389	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	439	441	first strand
Strand 2	A	478	480	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	559	562	first strand
Strand 2	A	551	553	anti-parallel
Strand 3	C	46	47	parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	640	641	first strand
Strand 2	A	672	677	parallel
Strand 3	A	656	662	anti-parallel
Strand 4	A	650	653	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	683	684	first strand
Strand 2	C	769	770	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	694	695	first strand
Strand 2	A	1056	1057	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	700	710	first strand
Strand 2	A	1041	1051	anti-parallel
Strand 3	A	1034	1038	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	716	718	first strand
Strand 2	A	840	842	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	769	770	first strand
Strand 2	B	683	684	parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	778	779	first strand
Strand 2	A	782	783	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1070	1072	first strand
Strand 2	A	1102	1104	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1085	1086	first strand
Strand 2	A	1095	1096	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	3	6	first strand
Strand 2	E	18	25	anti-parallel
Strand 3	E	78	83	anti-parallel
Strand 4	E	68	71	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	10	11	first strand
Strand 2	E	116	119	parallel
Strand 3	E	93	95	anti-parallel
Strand 4	E	37	39	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	142	146	first strand
Strand 2	E	183	192	anti-parallel
Strand 3	E	172	177	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	4	5	first strand
Strand 2	D	24	25	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	10	13	first strand
Strand 2	D	105	108	parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	21	22	first strand
Strand 2	D	70	75	anti-parallel
Strand 3	D	62	67	anti-parallel

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There are 5 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	53	54	first strand
Strand 2	D	44	49	anti-parallel
Strand 3	D	33	38	anti-parallel
Strand 4	D	88	91	anti-parallel
Strand 5	D	98	100	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	116	120	first strand
Strand 2	D	133	141	anti-parallel
Strand 3	D	175	182	anti-parallel
Strand 4	D	161	165	anti-parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	149	150	first strand
Strand 2	D	194	198	anti-parallel
Strand 3	D	207	211	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	3	6	first strand
Strand 2	G	18	25	anti-parallel
Strand 3	G	78	83	anti-parallel
Strand 4	G	68	71	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	10	11	first strand
Strand 2	G	116	119	parallel
Strand 3	G	92	95	anti-parallel
Strand 4	G	37	39	anti-parallel

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There are 3 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	142	146	first strand
Strand 2	G	183	192	anti-parallel
Strand 3	G	172	177	anti-parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	4	5	first strand
Strand 2	F	24	25	anti-parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	10	13	first strand
Strand 2	F	105	108	parallel

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There are 3 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	21	22	first strand
Strand 2	F	70	75	anti-parallel
Strand 3	F	62	67	anti-parallel

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There are 5 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	53	54	first strand
Strand 2	F	44	49	anti-parallel
Strand 3	F	33	38	anti-parallel
Strand 4	F	88	91	anti-parallel
Strand 5	F	98	100	anti-parallel

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There are 4 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	116	120	first strand
Strand 2	F	133	141	anti-parallel
Strand 3	F	175	182	anti-parallel
Strand 4	F	161	165	anti-parallel

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There are 3 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	147	150	first strand
Strand 2	F	194	199	anti-parallel
Strand 3	F	207	211	anti-parallel

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There are 3 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	51	55	first strand
Strand 2	B	262	266	anti-parallel
Strand 3	B	275	277	anti-parallel

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There are 4 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	89	91	first strand
Strand 2	B	183	189	anti-parallel
Strand 3	B	194	200	anti-parallel
Strand 4	B	217	220	anti-parallel

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There are 5 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	162	166	first strand
Strand 2	B	122	126	anti-parallel
Strand 3	B	114	118	anti-parallel
Strand 4	B	100	104	anti-parallel
Strand 5	B	230	232	anti-parallel

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There are 3 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	298	306	first strand
Strand 2	B	578	585	anti-parallel
Strand 3	B	595	597	anti-parallel

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There are 4 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	312	315	first strand
Strand 2	B	524	529	parallel
Strand 3	B	532	538	anti-parallel
Strand 4	B	573	574	anti-parallel

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There are 4 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	366	367	first strand
Strand 2	B	418	424	anti-parallel
Strand 3	B	494	501	anti-parallel
Strand 4	B	382	383	anti-parallel

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There are 4 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	366	367	first strand
Strand 2	B	418	424	anti-parallel
Strand 3	B	494	501	anti-parallel
Strand 4	B	387	389	anti-parallel

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There are 2 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	439	441	first strand
Strand 2	B	478	480	anti-parallel

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There are 2 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	551	553	first strand
Strand 2	B	559	562	anti-parallel

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There are 4 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	640	641	first strand
Strand 2	B	672	677	parallel
Strand 3	B	656	662	anti-parallel
Strand 4	B	650	653	anti-parallel

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There are 2 strands in AF1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	694	695	first strand
Strand 2	B	1056	1057	anti-parallel

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There are 3 strands in AF2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	700	710	first strand
Strand 2	B	1041	1051	anti-parallel
Strand 3	B	1034	1038	anti-parallel

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There are 2 strands in AF3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	716	718	first strand
Strand 2	B	840	842	anti-parallel

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There are 2 strands in AF4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	769	770	first strand
Strand 2	C	683	684	parallel

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There are 2 strands in AF5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	778	779	first strand
Strand 2	B	782	783	anti-parallel

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There are 2 strands in AF6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1070	1072	first strand
Strand 2	B	1102	1104	anti-parallel

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There are 3 strands in AF7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	52	55	first strand
Strand 2	C	262	265	anti-parallel
Strand 3	C	275	277	anti-parallel

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There are 5 strands in AF8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	217	220	first strand
Strand 2	C	194	200	anti-parallel
Strand 3	C	181	189	anti-parallel
Strand 4	C	87	93	anti-parallel
Strand 5	C	255	256	anti-parallel

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There are 5 strands in AF9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	163	166	first strand
Strand 2	C	122	126	anti-parallel
Strand 3	C	114	118	anti-parallel
Strand 4	C	100	103	anti-parallel
Strand 5	C	231	232	anti-parallel

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There are 3 strands in AG1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	298	306	first strand
Strand 2	C	578	585	anti-parallel
Strand 3	C	595	597	anti-parallel

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There are 4 strands in AG2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	312	313	first strand
Strand 2	C	524	529	parallel
Strand 3	C	532	538	anti-parallel
Strand 4	C	573	574	anti-parallel

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There are 4 strands in AG3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	365	367	first strand
Strand 2	C	418	424	anti-parallel
Strand 3	C	494	500	anti-parallel
Strand 4	C	387	389	anti-parallel

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There are 2 strands in AG4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	439	441	first strand
Strand 2	C	478	480	anti-parallel

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There are 2 strands in AG5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	551	553	first strand
Strand 2	C	559	562	anti-parallel

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There are 4 strands in AG6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	640	641	first strand
Strand 2	C	672	677	parallel
Strand 3	C	656	662	anti-parallel
Strand 4	C	650	653	anti-parallel

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There are 2 strands in AG7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	694	695	first strand
Strand 2	C	1056	1057	anti-parallel

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There are 3 strands in AG8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	700	710	first strand
Strand 2	C	1041	1051	anti-parallel
Strand 3	C	1034	1038	anti-parallel

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There are 2 strands in AG9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	716	718	first strand
Strand 2	C	840	842	anti-parallel

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There are 2 strands in AH1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	778	779	first strand
Strand 2	C	782	783	anti-parallel

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There are 2 strands in AH2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1063	1064	first strand
Strand 2	C	1115	1116	parallel

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There are 2 strands in AH3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1071	1072	first strand
Strand 2	C	1102	1103	anti-parallel

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Analysis of interatomic Contacts of Structural Units in PDB entry: 8KDM

Analysis of interatomic Contacts of Structural Units in PDB entry:
8KDM