Analysis of interatomic Contacts of Structural Units in PDB entry:
8KDP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8KDP entry

There are 2 chains in PDB entry 8KDP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 162LEU 213
B
 VAL 44THR 507
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 27 helices in PDB entry 8KDP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
165 174Right-handed alpha
Helix 2
AA2
A
175 207Right-handed alpha
Helix 3
AA3
B
51 65Right-handed alpha
Helix 4
AA4
B
66 71Right-handed alpha
Helix 5
AA5
B
72 77Right-handed alpha
Helix 6
AA6
B
81 110Right-handed alpha
Helix 7
AA7
B
115 125Right-handed alpha
Helix 8
AA8
B
125 139Right-handed alpha
Helix 9
AA9
B
139 158Right-handed alpha
Helix 10
AB1
B
159 161Right-handed 310
Helix 11
AB2
B
167 189Right-handed alpha
Helix 12
AB3
B
189 222Right-handed alpha
Helix 13
AB4
B
239 255Right-handed alpha
Helix 14
AB5
B
256 264Right-handed 310
Helix 15
AB6
B
269 298Right-handed alpha
Helix 16
AB7
B
301 307Right-handed alpha
Helix 17
AB8
B
310 321Right-handed alpha
Helix 18
AB9
B
325 356Right-handed alpha
Helix 19
AC1
B
360 365Right-handed 310
Helix 20
AC2
B
373 386Right-handed alpha
Helix 21
AC3
B
387 390Right-handed 310
Helix 22
AC4
B
393 399Right-handed alpha
Helix 23
AC5
B
400 422Right-handed alpha
Helix 24
AC6
B
434 454Right-handed alpha
Helix 25
AC7
B
454 466Right-handed alpha
Helix 26
AC8
B
467 476Right-handed alpha
Helix 27
AC9
B
482 501Right-handed alpha
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There are no sheets in PDB entry 8KDP
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il