Analysis of interatomic Contacts of Structural Units in PDB entry:
8KE9

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8KE9 entry

There are 3 chains in PDB entry 8KE9 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 245	GLY 462
B	ASP 245	GLY 462
C	ASP 245	GLY 462

There are 9 helices in PDB entry 8KE9. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	245	266	Right-handed alpha
Helix 2	AA2	A	269	280	Right-handed alpha
Helix 3	AA3	A	307	318	Right-handed alpha
Helix 4	AA4	B	247	266	Right-handed alpha
Helix 5	AA5	B	269	279	Right-handed alpha
Helix 6	AA6	B	307	317	Right-handed alpha
Helix 7	AA7	C	246	267	Right-handed alpha
Helix 8	AA8	C	269	280	Right-handed alpha
Helix 9	AA9	C	307	317	Right-handed alpha

There are 11 sheets in PDB entry 8KE9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	328	330	first strand
Strand 2	A	448	459	anti-parallel
Strand 3	A	367	380	anti-parallel
Strand 4	A	417	418	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	345	348	first strand
Strand 2	A	321	324	anti-parallel
Strand 3	A	448	459	anti-parallel
Strand 4	A	367	380	anti-parallel
Strand 5	A	421	427	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	339	340	first strand
Strand 2	A	436	442	anti-parallel
Strand 3	A	387	394	anti-parallel
Strand 4	A	403	410	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	355	357	first strand
Strand 2	A	360	362	anti-parallel
Strand 3	A	432	433	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	328	330	first strand
Strand 2	B	448	460	anti-parallel
Strand 3	B	321	324	anti-parallel
Strand 4	B	345	347	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	328	330	first strand
Strand 2	B	448	460	anti-parallel
Strand 3	B	367	380	anti-parallel
Strand 4	B	417	427	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	339	340	first strand
Strand 2	B	436	442	anti-parallel
Strand 3	B	387	393	anti-parallel
Strand 4	B	404	408	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	355	357	first strand
Strand 2	B	360	362	anti-parallel
Strand 3	B	432	433	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	345	348	first strand
Strand 2	C	321	330	anti-parallel
Strand 3	C	448	461	anti-parallel
Strand 4	C	367	380	anti-parallel
Strand 5	C	417	427	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	339	340	first strand
Strand 2	C	436	442	anti-parallel
Strand 3	C	387	394	anti-parallel
Strand 4	C	403	407	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	355	356	first strand
Strand 2	C	361	362	anti-parallel
Strand 3	C	432	433	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8KE9

Analysis of interatomic Contacts of Structural Units in PDB entry:
8KE9