Analysis of interatomic Contacts of Structural Units in PDB entry:
8KEL


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8KEL entry

There are 4 chains in PDB entry 8KEL (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1LEU 221
B
 MET 1PRO 224
C
 MET 1ALA 206
D
 MET 1PRO 224
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 37 helices in PDB entry 8KEL. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
36 44Right-handed alpha
Helix 2
AA2
A
50 55Right-handed alpha
Helix 3
AA3
A
61 70Right-handed alpha
Helix 4
AA4
A
74 80Right-handed 310
Helix 5
AA5
A
87 101Right-handed alpha
Helix 6
AA6
A
115 134Right-handed alpha
Helix 7
AA7
A
137 141Right-handed 310
Helix 8
AA8
A
150 152Right-handed 310
Helix 9
AA9
A
157 166Right-handed alpha
Helix 10
AB1
A
187 208Right-handed alpha
Helix 11
AB2
B
36 44Right-handed alpha
Helix 12
AB3
B
51 55Right-handed 310
Helix 13
AB4
B
61 70Right-handed alpha
Helix 14
AB5
B
74 78Right-handed 310
Helix 15
AB6
B
87 102Right-handed alpha
Helix 16
AB7
B
118 134Right-handed alpha
Helix 17
AB8
B
143 147Right-handed 310
Helix 18
AB9
B
150 154Right-handed 310
Helix 19
AC1
B
156 166Right-handed alpha
Helix 20
AC2
B
187 208Right-handed alpha
Helix 21
AC3
C
37 42Right-handed alpha
Helix 22
AC4
C
51 55Right-handed 310
Helix 23
AC5
C
61 69Right-handed alpha
Helix 24
AC6
C
72 80Right-handed alpha
Helix 25
AC7
C
87 101Right-handed alpha
Helix 26
AC8
C
118 134Right-handed alpha
Helix 27
AC9
C
137 141Right-handed 310
Helix 28
AD1
C
157 165Right-handed alpha
Helix 29
AD2
C
187 206Right-handed alpha
Helix 30
AD3
D
37 44Right-handed alpha
Helix 31
AD4
D
61 70Right-handed alpha
Helix 32
AD5
D
72 78Right-handed alpha
Helix 33
AD6
D
87 101Right-handed alpha
Helix 34
AD7
D
118 133Right-handed alpha
Helix 35
AD8
D
143 147Right-handed 310
Helix 36
AD9
D
156 165Right-handed alpha
Helix 37
AE1
D
187 208Right-handed alpha
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There are 5 sheets in PDB entry 8KEL. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
85 86first strand
Strand 2
A
45 49parallel
Strand 3
A
19 27anti-parallel
Strand 4
A
3 10anti-parallel
Strand 5
A
111 113parallel
Strand 6
A
154 156parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
45 48first strand
Strand 2
B
19 27anti-parallel
Strand 3
B
3 10anti-parallel
Strand 4
B
111 112parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
45 48first strand
Strand 2
C
19 27anti-parallel
Strand 3
C
3 10anti-parallel
Strand 4
C
111 113parallel
Strand 5
C
155 156parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
8 10first strand
Strand 2
D
19 27anti-parallel
Strand 3
D
45 48anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
8 10first strand
Strand 2
D
19 27anti-parallel
Strand 3
D
3 5anti-parallel
Strand 4
D
111 112parallel
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