Analysis of interatomic Contacts of Structural Units in PDB entry:
8KEN


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8KEN entry

There are 2 chains in PDB entry 8KEN (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 MET 1PRO 224
A
 MET 1PRO 224
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 23 helices in PDB entry 8KEN. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
36 44Right-handed alpha
Helix 2
AA2
B
51 55Right-handed 310
Helix 3
AA3
B
61 70Right-handed alpha
Helix 4
AA4
B
72 78Right-handed alpha
Helix 5
AA5
B
87 101Right-handed alpha
Helix 6
AA6
B
115 134Right-handed alpha
Helix 7
AA7
B
137 141Right-handed 310
Helix 8
AA8
B
150 152Right-handed 310
Helix 9
AA9
B
157 166Right-handed alpha
Helix 10
AB1
B
187 207Right-handed alpha
Helix 11
AB2
B
219 223Right-handed 310
Helix 12
AB3
A
36 44Right-handed alpha
Helix 13
AB4
A
51 55Right-handed 310
Helix 14
AB5
A
61 70Right-handed alpha
Helix 15
AB6
A
72 79Right-handed alpha
Helix 16
AB7
A
87 101Right-handed alpha
Helix 17
AB8
A
115 134Right-handed alpha
Helix 18
AB9
A
137 141Right-handed 310
Helix 19
AC1
A
150 152Right-handed 310
Helix 20
AC2
A
157 166Right-handed alpha
Helix 21
AC3
A
187 208Right-handed alpha
Helix 22
AC4
A
214 218Right-handed 310
Helix 23
AC5
A
219 223Right-handed 310
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There are 2 sheets in PDB entry 8KEN. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
45 48first strand
Strand 2
B
19 27anti-parallel
Strand 3
B
3 10anti-parallel
Strand 4
B
111 113parallel
Strand 5
B
154 156parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
45 48first strand
Strand 2
A
19 27anti-parallel
Strand 3
A
3 10anti-parallel
Strand 4
A
111 113parallel
Strand 5
A
154 156parallel
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