Analysis of interatomic Contacts of Structural Units in PDB entry:
8KES

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8KES entry

There are 8 chains in PDB entry 8KES (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	ARG 266
D	ALA 183	GLU 723
E	PRO 35	ARG 285
G	ALA 349	ALA 351
B	MET 1	ARG 266
C	ALA 183	GLU 723
F	PRO 35	ARG 285
H	ALA 349	ALA 351

There are 72 helices in PDB entry 8KES. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	1	26	Right-handed alpha
Helix 2	AA2	A	29	39	Right-handed alpha
Helix 3	AA3	A	39	66	Right-handed alpha
Helix 4	AA4	A	72	95	Right-handed alpha
Helix 5	AA5	A	103	129	Right-handed alpha
Helix 6	AA6	A	134	166	Right-handed alpha
Helix 7	AA7	A	169	200	Right-handed alpha
Helix 8	AA8	A	205	235	Right-handed alpha
Helix 9	AA9	A	244	266	Right-handed alpha
Helix 10	AB1	D	184	197	Right-handed alpha
Helix 11	AB2	D	199	215	Right-handed alpha
Helix 12	AB3	D	221	230	Right-handed alpha
Helix 13	AB4	D	239	253	Right-handed alpha
Helix 14	AB5	D	254	268	Right-handed alpha
Helix 15	AB6	D	277	289	Right-handed alpha
Helix 16	AB7	D	291	303	Right-handed alpha
Helix 17	AB8	D	310	333	Right-handed alpha
Helix 18	AB9	D	341	346	Right-handed alpha
Helix 19	AC1	D	483	496	Right-handed alpha
Helix 20	AC2	D	505	512	Right-handed alpha
Helix 21	AC3	D	513	517	Right-handed 310
Helix 22	AC4	D	519	532	Right-handed alpha
Helix 23	AC5	D	538	551	Right-handed alpha
Helix 24	AC6	D	557	568	Right-handed alpha
Helix 25	AC7	D	578	584	Right-handed alpha
Helix 26	AC8	D	587	599	Right-handed alpha
Helix 27	AC9	D	610	624	Right-handed alpha
Helix 28	AD1	D	627	639	Right-handed alpha
Helix 29	AD2	D	646	656	Right-handed alpha
Helix 30	AD3	D	664	676	Right-handed alpha
Helix 31	AD4	D	683	698	Right-handed alpha
Helix 32	AD5	D	701	723	Right-handed alpha
Helix 33	AD6	E	101	103	Right-handed 310
Helix 34	AD7	E	104	111	Right-handed alpha
Helix 35	AD8	E	242	246	Right-handed 310
Helix 36	AD9	E	273	285	Right-handed alpha
Helix 37	AE1	B	2	26	Right-handed alpha
Helix 38	AE2	B	29	39	Right-handed alpha
Helix 39	AE3	B	39	66	Right-handed alpha
Helix 40	AE4	B	72	95	Right-handed alpha
Helix 41	AE5	B	103	127	Right-handed alpha
Helix 42	AE6	B	134	161	Right-handed alpha
Helix 43	AE7	B	161	166	Right-handed alpha
Helix 44	AE8	B	170	201	Right-handed alpha
Helix 45	AE9	B	205	237	Right-handed alpha
Helix 46	AF1	B	244	266	Right-handed alpha
Helix 47	AF2	C	184	197	Right-handed alpha
Helix 48	AF3	C	199	215	Right-handed alpha
Helix 49	AF4	C	221	230	Right-handed alpha
Helix 50	AF5	C	239	253	Right-handed alpha
Helix 51	AF6	C	254	268	Right-handed alpha
Helix 52	AF7	C	277	288	Right-handed alpha
Helix 53	AF8	C	291	303	Right-handed alpha
Helix 54	AF9	C	310	333	Right-handed alpha
Helix 55	AG1	C	341	346	Right-handed alpha
Helix 56	AG2	C	483	496	Right-handed alpha
Helix 57	AG3	C	505	512	Right-handed alpha
Helix 58	AG4	C	513	517	Right-handed 310
Helix 59	AG5	C	519	532	Right-handed alpha
Helix 60	AG6	C	538	551	Right-handed alpha
Helix 61	AG7	C	557	568	Right-handed alpha
Helix 62	AG8	C	578	584	Right-handed alpha
Helix 63	AG9	C	587	599	Right-handed alpha
Helix 64	AH1	C	610	624	Right-handed alpha
Helix 65	AH2	C	627	639	Right-handed alpha
Helix 66	AH3	C	646	656	Right-handed alpha
Helix 67	AH4	C	664	676	Right-handed alpha
Helix 68	AH5	C	683	698	Right-handed alpha
Helix 69	AH6	C	701	723	Right-handed alpha
Helix 70	AH7	F	104	111	Right-handed alpha
Helix 71	AH8	F	242	246	Right-handed 310
Helix 72	AH9	F	274	285	Right-handed alpha

There are 9 sheets in PDB entry 8KES. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	43	49	first strand
Strand 2	E	257	263	parallel
Strand 3	E	76	82	anti-parallel
Strand 4	E	61	70	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	116	117	first strand
Strand 2	E	122	126	anti-parallel
Strand 3	E	130	138	anti-parallel
Strand 4	E	144	153	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	189	193	first strand
Strand 2	E	208	215	anti-parallel
Strand 3	E	233	240	parallel
Strand 4	E	226	230	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	198	199	first strand
Strand 2	E	205	206	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	43	46	first strand
Strand 2	F	257	263	parallel
Strand 3	F	76	82	anti-parallel
Strand 4	F	61	70	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	116	117	first strand
Strand 2	F	122	126	anti-parallel
Strand 3	F	130	138	anti-parallel
Strand 4	F	144	153	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	178	181	first strand
Strand 2	F	184	187	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	189	193	first strand
Strand 2	F	208	215	anti-parallel
Strand 3	F	233	240	parallel
Strand 4	F	226	230	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	198	199	first strand
Strand 2	F	205	206	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8KES

Analysis of interatomic Contacts of Structural Units in PDB entry:
8KES