Analysis of interatomic Contacts of Structural Units in PDB entry:
8KFK


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8KFK entry

There are 2 chains in PDB entry 8KFK (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 20PRO 310
B
 SER 23SER 306
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 30 helices in PDB entry 8KFK. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
30 42Right-handed alpha
Helix 2
AA2
A
57 63Right-handed alpha
Helix 3
AA3
A
70 77Right-handed alpha
Helix 4
AA4
A
87 96Right-handed alpha
Helix 5
AA5
A
97 103Right-handed 310
Helix 6
AA6
A
114 127Right-handed alpha
Helix 7
AA7
A
140 144Right-handed 310
Helix 8
AA8
A
156 168Right-handed alpha
Helix 9
AA9
A
181 211Right-handed alpha
Helix 10
AB1
A
214 228Right-handed alpha
Helix 11
AB2
A
228 242Right-handed alpha
Helix 12
AB3
A
251 269Right-handed alpha
Helix 13
AB4
A
273 289Right-handed alpha
Helix 14
AB5
A
295 297Right-handed 310
Helix 15
AB6
A
298 304Right-handed alpha
Helix 16
AB7
B
30 42Right-handed alpha
Helix 17
AB8
B
58 63Right-handed 310
Helix 18
AB9
B
70 77Right-handed alpha
Helix 19
AC1
B
87 96Right-handed alpha
Helix 20
AC2
B
98 102Right-handed 310
Helix 21
AC3
B
114 127Right-handed alpha
Helix 22
AC4
B
140 144Right-handed 310
Helix 23
AC5
B
156 163Right-handed alpha
Helix 24
AC6
B
163 169Right-handed alpha
Helix 25
AC7
B
181 211Right-handed alpha
Helix 26
AC8
B
214 242Right-handed alpha
Helix 27
AC9
B
251 269Right-handed alpha
Helix 28
AD1
B
273 289Right-handed alpha
Helix 29
AD2
B
295 297Right-handed 310
Helix 30
AD3
B
298 304Right-handed alpha
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There are 2 sheets in PDB entry 8KFK. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
66 67first strand
Strand 2
A
46 50parallel
Strand 3
A
23 27parallel
Strand 4
A
80 83parallel
Strand 5
A
106 109parallel
Strand 6
A
131 137parallel
Strand 7
A
150 154anti-parallel
Strand 8
A
172 177parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
65 67first strand
Strand 2
B
47 50parallel
Strand 3
B
24 27parallel
Strand 4
B
80 83parallel
Strand 5
B
106 110parallel
Strand 6
B
131 137parallel
Strand 7
B
150 154anti-parallel
Strand 8
B
172 177parallel
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