Analysis of interatomic Contacts of Structural Units in PDB entry:
8KFR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8KFR entry

There are 5 chains in PDB entry 8KFR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 109PRO 271
B
 GLY 109PRO 271
C
 C 1 T 33
D
 A 1 C 25
E
 C 26 G 33
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 8KFR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
152 162Right-handed alpha
Helix 2
AA2
A
183 204Right-handed alpha
Helix 3
AA3
A
212 220Right-handed alpha
Helix 4
AA4
A
227 240Right-handed alpha
Helix 5
AA5
A
241 248Right-handed 310
Helix 6
AA6
A
249 251Right-handed 310
Helix 7
AA7
A
252 267Right-handed alpha
Helix 8
AA8
B
152 162Right-handed alpha
Helix 9
AA9
B
183 204Right-handed alpha
Helix 10
AB1
B
212 220Right-handed alpha
Helix 11
AB2
B
227 240Right-handed alpha
Helix 12
AB3
B
241 248Right-handed 310
Helix 13
AB4
B
249 251Right-handed 310
Helix 14
AB5
B
252 267Right-handed alpha
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There are 4 sheets in PDB entry 8KFR. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
131 135first strand
Strand 2
A
121 125anti-parallel
Strand 3
A
111 115anti-parallel
Strand 4
A
170 174parallel
Strand 5
A
207 211parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
138 143first strand
Strand 2
A
146 151anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
131 135first strand
Strand 2
B
121 125anti-parallel
Strand 3
B
111 115anti-parallel
Strand 4
B
170 174parallel
Strand 5
B
207 211parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
138 143first strand
Strand 2
B
146 151anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il