Analysis of interatomic Contacts of Structural Units in PDB entry:
8KG5

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8KG5 entry

There are 5 chains in PDB entry 8KG5 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLN 26	LEU 513
B	GLN 26	LEU 513
C	GLN 26	LEU 513
D	GLN 1	VAL 111
E	ASP 1	ILE 106

There are 53 helices in PDB entry 8KG5. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	73	95	Right-handed alpha
Helix 2	AA2	A	148	159	Right-handed alpha
Helix 3	AA3	A	162	172	Right-handed alpha
Helix 4	AA4	A	195	202	Right-handed alpha
Helix 5	AA5	A	203	208	Right-handed alpha
Helix 6	AA6	A	208	213	Right-handed alpha
Helix 7	AA7	A	216	227	Right-handed alpha
Helix 8	AA8	A	227	240	Right-handed alpha
Helix 9	AA9	A	253	263	Right-handed alpha
Helix 10	AB1	A	267	277	Right-handed alpha
Helix 11	AB2	A	277	282	Right-handed alpha
Helix 12	AB3	A	354	358	Right-handed 310
Helix 13	AB4	A	368	372	Right-handed 310
Helix 14	AB5	A	376	379	Right-handed 310
Helix 15	AB6	A	380	385	Right-handed alpha
Helix 16	AB7	A	473	477	Right-handed 310
Helix 17	AB8	A	492	512	Right-handed alpha
Helix 18	AB9	B	73	95	Right-handed alpha
Helix 19	AC1	B	148	158	Right-handed alpha
Helix 20	AC2	B	162	172	Right-handed alpha
Helix 21	AC3	B	195	202	Right-handed alpha
Helix 22	AC4	B	203	208	Right-handed alpha
Helix 23	AC5	B	208	213	Right-handed alpha
Helix 24	AC6	B	216	227	Right-handed alpha
Helix 25	AC7	B	227	240	Right-handed alpha
Helix 26	AC8	B	253	263	Right-handed alpha
Helix 27	AC9	B	267	277	Right-handed alpha
Helix 28	AD1	B	277	282	Right-handed alpha
Helix 29	AD2	B	368	372	Right-handed 310
Helix 30	AD3	B	376	379	Right-handed 310
Helix 31	AD4	B	380	385	Right-handed alpha
Helix 32	AD5	B	473	477	Right-handed 310
Helix 33	AD6	B	492	512	Right-handed alpha
Helix 34	AD7	C	73	95	Right-handed alpha
Helix 35	AD8	C	148	157	Right-handed alpha
Helix 36	AD9	C	158	160	Right-handed 310
Helix 37	AE1	C	162	172	Right-handed alpha
Helix 38	AE2	C	195	202	Right-handed alpha
Helix 39	AE3	C	203	213	Right-handed alpha
Helix 40	AE4	C	216	227	Right-handed alpha
Helix 41	AE5	C	227	240	Right-handed alpha
Helix 42	AE6	C	253	263	Right-handed alpha
Helix 43	AE7	C	267	277	Right-handed alpha
Helix 44	AE8	C	277	282	Right-handed alpha
Helix 45	AE9	C	354	358	Right-handed 310
Helix 46	AF1	C	368	372	Right-handed 310
Helix 47	AF2	C	376	379	Right-handed 310
Helix 48	AF3	C	380	385	Right-handed alpha
Helix 49	AF4	C	473	477	Right-handed 310
Helix 50	AF5	C	492	512	Right-handed alpha
Helix 51	AF6	D	28	30	Right-handed 310
Helix 52	AF7	D	61	64	Right-handed 310
Helix 53	AF8	E	79	83	Right-handed 310

There are 29 sheets in PDB entry 8KG5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	349	352	first strand
Strand 2	A	340	344	anti-parallel
Strand 3	A	308	318	anti-parallel
Strand 4	A	38	48	anti-parallel
Strand 5	A	364	366	parallel
Strand 6	A	359	360	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	349	352	first strand
Strand 2	A	340	344	anti-parallel
Strand 3	A	308	318	anti-parallel
Strand 4	A	38	48	anti-parallel
Strand 5	A	30	33	anti-parallel
Strand 6	A	466	469	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	193	194	first strand
Strand 2	A	51	60	parallel
Strand 3	A	296	305	anti-parallel
Strand 4	A	286	291	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	176	180	first strand
Strand 2	A	186	190	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	321	322	first strand
Strand 2	A	333	336	anti-parallel
Strand 3	A	394	398	anti-parallel
Strand 4	A	490	491	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	404	406	first strand
Strand 2	A	411	416	anti-parallel
Strand 3	A	438	443	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	431	434	first strand
Strand 2	A	423	425	anti-parallel
Strand 3	A	449	452	anti-parallel
Strand 4	A	455	458	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	349	352	first strand
Strand 2	B	340	344	anti-parallel
Strand 3	B	308	318	anti-parallel
Strand 4	B	38	48	anti-parallel
Strand 5	B	364	366	parallel
Strand 6	B	359	360	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	349	352	first strand
Strand 2	B	340	344	anti-parallel
Strand 3	B	308	318	anti-parallel
Strand 4	B	38	48	anti-parallel
Strand 5	B	30	33	anti-parallel
Strand 6	B	466	469	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	193	194	first strand
Strand 2	B	51	60	parallel
Strand 3	B	296	305	anti-parallel
Strand 4	B	286	291	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	176	180	first strand
Strand 2	B	186	190	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	321	322	first strand
Strand 2	B	333	336	anti-parallel
Strand 3	B	394	398	anti-parallel
Strand 4	B	490	491	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	404	406	first strand
Strand 2	B	411	416	anti-parallel
Strand 3	B	438	443	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	431	434	first strand
Strand 2	B	422	425	anti-parallel
Strand 3	B	449	452	anti-parallel
Strand 4	B	455	458	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	349	352	first strand
Strand 2	C	340	344	anti-parallel
Strand 3	C	308	318	anti-parallel
Strand 4	C	38	48	anti-parallel
Strand 5	C	364	366	parallel
Strand 6	C	359	360	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	349	352	first strand
Strand 2	C	340	344	anti-parallel
Strand 3	C	308	318	anti-parallel
Strand 4	C	38	48	anti-parallel
Strand 5	C	30	33	anti-parallel
Strand 6	C	466	469	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	193	194	first strand
Strand 2	C	51	60	parallel
Strand 3	C	296	305	anti-parallel
Strand 4	C	286	291	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	64	66	first strand
Strand 2	D	100	100	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	176	180	first strand
Strand 2	C	186	190	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	321	322	first strand
Strand 2	C	333	336	anti-parallel
Strand 3	C	394	398	anti-parallel
Strand 4	C	490	491	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	404	406	first strand
Strand 2	C	411	416	anti-parallel
Strand 3	C	438	443	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	431	434	first strand
Strand 2	C	423	425	anti-parallel
Strand 3	C	449	452	anti-parallel
Strand 4	C	455	458	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	3	6	first strand
Strand 2	D	18	25	anti-parallel
Strand 3	D	77	82	anti-parallel
Strand 4	D	67	72	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	10	11	first strand
Strand 2	D	107	110	parallel
Strand 3	D	88	96	anti-parallel
Strand 4	D	32	39	anti-parallel
Strand 5	D	45	51	anti-parallel
Strand 6	D	57	59	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	10	11	first strand
Strand 2	D	107	110	parallel
Strand 3	D	88	96	anti-parallel
Strand 4	D	102	103	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	4	6	first strand
Strand 2	E	23	25	anti-parallel
Strand 3	E	70	75	anti-parallel
Strand 4	E	19	20	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	4	6	first strand
Strand 2	E	23	25	anti-parallel
Strand 3	E	70	75	anti-parallel
Strand 4	E	62	65	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	11	12	first strand
Strand 2	E	104	105	parallel

Back to list of sheets
Back to top of page

There are 3 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	45	48	first strand
Strand 2	E	33	38	anti-parallel
Strand 3	E	85	90	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8KG5

Analysis of interatomic Contacts of Structural Units in PDB entry:
8KG5