Analysis of interatomic Contacts of Structural Units in PDB entry:
8KGA


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8KGA entry

There are 2 chains in PDB entry 8KGA (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 53ARG 298
B
 LYS 51GLY 303
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 26 helices in PDB entry 8KGA. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
87 94Right-handed alpha
Helix 2
AA2
A
101 104Right-handed 310
Helix 3
AA3
A
105 120Right-handed alpha
Helix 4
AA4
A
133 137Right-handed 310
Helix 5
AA5
A
138 163Right-handed alpha
Helix 6
AA6
A
172 176Right-handed 310
Helix 7
AA7
A
177 192Right-handed alpha
Helix 8
AA8
A
206 224Right-handed alpha
Helix 9
AA9
A
228 232Right-handed 310
Helix 10
AB1
A
233 241Right-handed alpha
Helix 11
AB2
A
265 269Right-handed 310
Helix 12
AB3
A
279 283Right-handed 310
Helix 13
AB4
A
284 297Right-handed alpha
Helix 14
AB5
B
87 94Right-handed alpha
Helix 15
AB6
B
98 104Right-handed 310
Helix 16
AB7
B
105 120Right-handed alpha
Helix 17
AB8
B
133 137Right-handed 310
Helix 18
AB9
B
138 163Right-handed alpha
Helix 19
AC1
B
172 176Right-handed 310
Helix 20
AC2
B
177 192Right-handed alpha
Helix 21
AC3
B
206 224Right-handed alpha
Helix 22
AC4
B
228 232Right-handed 310
Helix 23
AC5
B
233 241Right-handed alpha
Helix 24
AC6
B
265 269Right-handed 310
Helix 25
AC7
B
279 283Right-handed 310
Helix 26
AC8
B
284 301Right-handed alpha
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There are 2 sheets in PDB entry 8KGA. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
166 170first strand
Strand 2
A
198 205parallel
Strand 3
A
124 131parallel
Strand 4
A
80 85parallel
Strand 5
A
250 254parallel
Strand 6
A
272 275parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
166 170first strand
Strand 2
B
198 205parallel
Strand 3
B
124 131parallel
Strand 4
B
80 85parallel
Strand 5
B
250 254parallel
Strand 6
B
272 275parallel
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