Analysis of interatomic Contacts of Structural Units in PDB entry:
8KGC

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8KGC entry

There are 4 chains in PDB entry 8KGC (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 98	ARG 430
B	SER 95	ARG 430
C	GLN 96	ARG 430
D	LEU 98	ARG 430

There are 39 helices in PDB entry 8KGC. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	115	117	Right-handed 310
Helix 2	AA2	A	118	133	Right-handed alpha
Helix 3	AA3	A	139	144	Right-handed alpha
Helix 4	AA4	A	151	159	Right-handed alpha
Helix 5	AA5	A	168	174	Right-handed alpha
Helix 6	AA6	A	183	194	Right-handed alpha
Helix 7	AA7	A	219	230	Right-handed alpha
Helix 8	AA8	A	321	325	Right-handed 310
Helix 9	AA9	A	326	331	Right-handed alpha
Helix 10	AB1	A	412	425	Right-handed alpha
Helix 11	AB2	B	115	117	Right-handed 310
Helix 12	AB3	B	118	132	Right-handed alpha
Helix 13	AB4	B	139	144	Right-handed alpha
Helix 14	AB5	B	145	150	Right-handed alpha
Helix 15	AB6	B	154	159	Right-handed alpha
Helix 16	AB7	B	171	175	Right-handed 310
Helix 17	AB8	B	183	194	Right-handed alpha
Helix 18	AB9	B	219	229	Right-handed alpha
Helix 19	AC1	B	321	325	Right-handed 310
Helix 20	AC2	B	326	331	Right-handed alpha
Helix 21	AC3	B	412	424	Right-handed alpha
Helix 22	AC4	C	118	132	Right-handed alpha
Helix 23	AC5	C	139	145	Right-handed alpha
Helix 24	AC6	C	145	150	Right-handed alpha
Helix 25	AC7	C	154	160	Right-handed alpha
Helix 26	AC8	C	183	194	Right-handed alpha
Helix 27	AC9	C	219	230	Right-handed alpha
Helix 28	AD1	C	321	325	Right-handed 310
Helix 29	AD2	C	326	331	Right-handed alpha
Helix 30	AD3	C	412	424	Right-handed alpha
Helix 31	AD4	D	118	132	Right-handed alpha
Helix 32	AD5	D	140	144	Right-handed alpha
Helix 33	AD6	D	145	150	Right-handed alpha
Helix 34	AD7	D	155	160	Right-handed alpha
Helix 35	AD8	D	183	194	Right-handed alpha
Helix 36	AD9	D	219	229	Right-handed alpha
Helix 37	AE1	D	321	325	Right-handed 310
Helix 38	AE2	D	326	331	Right-handed alpha
Helix 39	AE3	D	412	424	Right-handed alpha

There are 16 sheets in PDB entry 8KGC. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	136	137	first strand
Strand 2	A	107	111	parallel
Strand 3	A	177	181	parallel
Strand 4	A	201	205	parallel
Strand 5	A	215	216	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	234	237	first strand
Strand 2	A	405	408	anti-parallel

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There are 9 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	278	282	first strand
Strand 2	A	240	245	anti-parallel
Strand 3	A	395	400	anti-parallel
Strand 4	A	366	370	anti-parallel
Strand 5	A	298	303	anti-parallel
Strand 6	A	306	319	anti-parallel
Strand 7	A	285	289	anti-parallel
Strand 8	A	378	382	anti-parallel
Strand 9	A	385	390	anti-parallel

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There are 9 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	278	282	first strand
Strand 2	A	240	245	anti-parallel
Strand 3	A	395	400	anti-parallel
Strand 4	A	366	370	anti-parallel
Strand 5	A	298	303	anti-parallel
Strand 6	A	306	319	anti-parallel
Strand 7	A	342	350	anti-parallel
Strand 8	A	358	361	anti-parallel
Strand 9	B	335	336	parallel

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There are 9 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	335	336	first strand
Strand 2	B	358	361	parallel
Strand 3	B	342	350	anti-parallel
Strand 4	B	306	319	anti-parallel
Strand 5	B	297	303	anti-parallel
Strand 6	B	366	370	anti-parallel
Strand 7	B	395	400	anti-parallel
Strand 8	B	240	246	anti-parallel
Strand 9	B	276	282	anti-parallel

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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	335	336	first strand
Strand 2	B	358	361	parallel
Strand 3	B	342	350	anti-parallel
Strand 4	B	306	319	anti-parallel
Strand 5	B	285	289	anti-parallel
Strand 6	B	378	382	anti-parallel
Strand 7	B	385	390	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	96	97	first strand
Strand 2	B	233	237	anti-parallel
Strand 3	B	405	408	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	161	163	first strand
Strand 2	B	135	138	parallel
Strand 3	B	106	111	parallel
Strand 4	B	177	181	parallel
Strand 5	B	201	205	parallel
Strand 6	B	215	216	parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	162	163	first strand
Strand 2	C	135	138	parallel
Strand 3	C	106	111	parallel
Strand 4	C	178	181	parallel
Strand 5	C	201	205	parallel
Strand 6	C	215	216	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	234	237	first strand
Strand 2	C	405	408	anti-parallel

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There are 9 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	277	282	first strand
Strand 2	C	240	245	anti-parallel
Strand 3	C	395	400	anti-parallel
Strand 4	C	366	370	anti-parallel
Strand 5	C	297	303	anti-parallel
Strand 6	C	306	319	anti-parallel
Strand 7	C	285	289	anti-parallel
Strand 8	C	378	382	anti-parallel
Strand 9	C	385	390	anti-parallel

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There are 9 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	277	282	first strand
Strand 2	C	240	245	anti-parallel
Strand 3	C	395	400	anti-parallel
Strand 4	C	366	370	anti-parallel
Strand 5	C	297	303	anti-parallel
Strand 6	C	306	319	anti-parallel
Strand 7	C	342	350	anti-parallel
Strand 8	C	358	361	anti-parallel
Strand 9	D	335	336	parallel

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There are 9 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	335	336	first strand
Strand 2	D	358	361	parallel
Strand 3	D	342	350	anti-parallel
Strand 4	D	306	319	anti-parallel
Strand 5	D	297	303	anti-parallel
Strand 6	D	366	370	anti-parallel
Strand 7	D	395	400	anti-parallel
Strand 8	D	240	245	anti-parallel
Strand 9	D	280	282	anti-parallel

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There are 7 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	335	336	first strand
Strand 2	D	358	361	parallel
Strand 3	D	342	350	anti-parallel
Strand 4	D	306	319	anti-parallel
Strand 5	D	285	289	anti-parallel
Strand 6	D	378	382	anti-parallel
Strand 7	D	388	390	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	99	100	first strand
Strand 2	D	232	237	anti-parallel
Strand 3	D	405	409	anti-parallel

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There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	162	164	first strand
Strand 2	D	136	139	parallel
Strand 3	D	107	111	parallel
Strand 4	D	178	181	parallel
Strand 5	D	201	205	parallel
Strand 6	D	215	216	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8KGC

Analysis of interatomic Contacts of Structural Units in PDB entry:
8KGC