Analysis of interatomic Contacts of Structural Units in PDB entry:
8KGE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8KGE entry

There are 2 chains in PDB entry 8KGE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
V
 PRO 4SER 246
v
 PRO 4SER 246
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 3 helices in PDB entry 8KGE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
V
92 103Right-handed alpha
Helix 2
AA2
v
92 103Right-handed alpha
Helix 3
AA3
v
151 156Right-handed 310
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There are 8 sheets in PDB entry 8KGE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
V
36 38first strand
Strand 2
V
16 20anti-parallel
Strand 3
V
106 111anti-parallel
Strand 4
V
117 130anti-parallel
Strand 5
V
138 145anti-parallel
Strand 6
V
79 85anti-parallel
Strand 7
V
42 46anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
V
36 38first strand
Strand 2
V
16 20anti-parallel
Strand 3
V
106 111anti-parallel
Strand 4
V
117 130anti-parallel
Strand 5
v
50 56anti-parallel
Strand 6
v
70 76anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
V
51 56first strand
Strand 2
V
70 76anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
V
164 166first strand
Strand 2
V
179 185anti-parallel
Strand 3
V
213 218anti-parallel
Strand 4
V
205 207anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
V
196 197first strand
Strand 2
V
222 229anti-parallel
Strand 3
V
236 243anti-parallel
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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
v
36 38first strand
Strand 2
v
16 20anti-parallel
Strand 3
v
106 111anti-parallel
Strand 4
v
117 130anti-parallel
Strand 5
v
138 145anti-parallel
Strand 6
v
79 85anti-parallel
Strand 7
v
42 46anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
v
165 166first strand
Strand 2
v
179 184anti-parallel
Strand 3
v
213 218anti-parallel
Strand 4
v
205 207anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
v
195 197first strand
Strand 2
v
222 230anti-parallel
Strand 3
v
236 243anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il