Analysis of interatomic Contacts of Structural Units in PDB entry:
8KGF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8KGF entry

There are 2 chains in PDB entry 8KGF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 3ARG 1292
G
 A -20 G 21
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 61 helices in PDB entry 8KGF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
6 10Right-handed 310
Helix 2
AA2
A
29 37Right-handed alpha
Helix 3
AA3
A
38 69Right-handed alpha
Helix 4
AA4
A
75 90Right-handed alpha
Helix 5
AA5
A
91 112Right-handed alpha
Helix 6
AA6
A
126 131Right-handed alpha
Helix 7
AA7
A
132 137Right-handed alpha
Helix 8
AA8
A
144 154Right-handed alpha
Helix 9
AA9
A
157 160Right-handed 310
Helix 10
AB1
A
161 173Right-handed alpha
Helix 11
AB2
A
180 187Right-handed alpha
Helix 12
AB3
A
189 195Right-handed alpha
Helix 13
AB4
A
196 207Right-handed alpha
Helix 14
AB5
A
207 222Right-handed alpha
Helix 15
AB6
A
228 234Right-handed alpha
Helix 16
AB7
A
237 241Right-handed 310
Helix 17
AB8
A
243 256Right-handed alpha
Helix 18
AB9
A
268 278Right-handed alpha
Helix 19
AC1
A
280 288Right-handed alpha
Helix 20
AC2
A
317 336Right-handed alpha
Helix 21
AC3
A
336 347Right-handed alpha
Helix 22
AC4
A
348 350Right-handed 310
Helix 23
AC5
A
362 372Right-handed alpha
Helix 24
AC6
A
375 389Right-handed alpha
Helix 25
AC7
A
394 407Right-handed alpha
Helix 26
AC8
A
410 418Right-handed alpha
Helix 27
AC9
A
422 444Right-handed alpha
Helix 28
AD1
A
452 475Right-handed alpha
Helix 29
AD2
A
485 498Right-handed alpha
Helix 30
AD3
A
501 515Right-handed alpha
Helix 31
AD4
A
537 539Right-handed 310
Helix 32
AD5
A
540 545Right-handed alpha
Helix 33
AD6
A
588 597Right-handed alpha
Helix 34
AD7
A
600 607Right-handed alpha
Helix 35
AD8
A
608 610Right-handed 310
Helix 36
AD9
A
628 635Right-handed alpha
Helix 37
AE1
A
647 654Right-handed alpha
Helix 38
AE2
A
656 677Right-handed alpha
Helix 39
AE3
A
684 688Right-handed 310
Helix 40
AE4
A
690 694Right-handed 310
Helix 41
AE5
A
696 708Right-handed alpha
Helix 42
AE6
A
717 727Right-handed alpha
Helix 43
AE7
A
737 741Right-handed 310
Helix 44
AE8
A
749 758Right-handed alpha
Helix 45
AE9
A
760 766Right-handed alpha
Helix 46
AF1
A
808 818Right-handed alpha
Helix 47
AF2
A
850 855Right-handed 310
Helix 48
AF3
A
876 888Right-handed alpha
Helix 49
AF4
A
923 927Right-handed 310
Helix 50
AF5
A
928 941Right-handed alpha
Helix 51
AF6
A
946 976Right-handed alpha
Helix 52
AF7
A
997 1013Right-handed alpha
Helix 53
AF8
A
1073 1077Right-handed 310
Helix 54
AF9
A
1079 1088Right-handed alpha
Helix 55
AG1
A
1167 1179Right-handed alpha
Helix 56
AG2
A
1182 1186Right-handed 310
Helix 57
AG3
A
1189 1196Right-handed alpha
Helix 58
AG4
A
1198 1213Right-handed alpha
Helix 59
AG5
A
1242 1244Right-handed 310
Helix 60
AG6
A
1251 1272Right-handed alpha
Helix 61
AG7
A
1280 1291Right-handed alpha
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There are 9 sheets in PDB entry 8KGF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
523 524first strand
Strand 2
A
776 780anti-parallel
Strand 3
A
857 866anti-parallel
Strand 4
A
16 26anti-parallel
Strand 5
A
730 736anti-parallel
Strand 6
A
554 560anti-parallel
Strand 7
A
546 551anti-parallel
Strand 8
A
578 585anti-parallel
Strand 9
A
709 716anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
523 524first strand
Strand 2
A
776 780anti-parallel
Strand 3
A
857 866anti-parallel
Strand 4
A
770 771anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
358 359first strand
Strand 2
A
408 409anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
614 616first strand
Strand 2
A
625 627anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
915 920first strand
Strand 2
A
904 909anti-parallel
Strand 3
A
893 898anti-parallel
Strand 4
A
978 982parallel
Strand 5
A
1051 1054parallel
Strand 6
A
1047 1048anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1090 1095first strand
Strand 2
A
1102 1107anti-parallel
Strand 3
A
1125 1130anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1135 1137first strand
Strand 2
A
1143 1145anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1149 1151first strand
Strand 2
A
1164 1166anti-parallel
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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1216 1218first strand
Strand 2
A
1225 1234anti-parallel
Strand 3
A
1237 1240anti-parallel
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