Analysis of interatomic Contacts of Structural Units in PDB entry:
8KGK


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8KGK entry

There are 5 chains in PDB entry 8KGK (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 43GLN 355
B
 GLN 12LEU 384
C
 SER 2ASN 340
D
 SER 8GLU 63
E
 GLN 1VAL 126
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 26 helices in PDB entry 8KGK. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
43 70Right-handed alpha
Helix 2
AA2
A
71 75Right-handed 310
Helix 3
AA3
A
76 102Right-handed alpha
Helix 4
AA4
A
112 145Right-handed alpha
Helix 5
AA5
A
146 154Right-handed alpha
Helix 6
AA6
A
155 185Right-handed alpha
Helix 7
AA7
A
202 217Right-handed alpha
Helix 8
AA8
A
217 238Right-handed alpha
Helix 9
AA9
A
284 314Right-handed alpha
Helix 10
AB1
A
319 341Right-handed alpha
Helix 11
AB2
A
347 355Right-handed alpha
Helix 12
AB3
B
13 39Right-handed alpha
Helix 13
AB4
B
52 61Right-handed alpha
Helix 14
AB5
B
233 238Right-handed 310
Helix 15
AB6
B
253 268Right-handed alpha
Helix 16
AB7
B
269 273Right-handed 310
Helix 17
AB8
B
283 294Right-handed alpha
Helix 18
AB9
B
297 302Right-handed alpha
Helix 19
AC1
B
303 306Right-handed 310
Helix 20
AC2
B
321 343Right-handed alpha
Helix 21
AC3
B
360 381Right-handed alpha
Helix 22
AC4
C
3 26Right-handed alpha
Helix 23
AC5
C
29 35Right-handed alpha
Helix 24
AC6
D
9 24Right-handed alpha
Helix 25
AC7
D
29 44Right-handed alpha
Helix 26
AC8
E
87 91Right-handed 310
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There are 10 sheets in PDB entry 8KGK. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
209 214first strand
Strand 2
B
217 223anti-parallel
Strand 3
B
40 47parallel
Strand 4
B
243 249parallel
Strand 5
B
277 282parallel
Strand 6
B
350 353parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
46 51first strand
Strand 2
C
336 340anti-parallel
Strand 3
C
327 330anti-parallel
Strand 4
C
319 320anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
58 62first strand
Strand 2
C
69 74anti-parallel
Strand 3
C
78 83anti-parallel
Strand 4
C
88 94anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
100 105first strand
Strand 2
C
111 116anti-parallel
Strand 3
C
120 125anti-parallel
Strand 4
C
135 140anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
146 151first strand
Strand 2
C
156 161anti-parallel
Strand 3
C
166 170anti-parallel
Strand 4
C
175 180anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
187 192first strand
Strand 2
C
198 203anti-parallel
Strand 3
C
207 212anti-parallel
Strand 4
C
218 223anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
229 232first strand
Strand 2
C
240 245anti-parallel
Strand 3
C
250 254anti-parallel
Strand 4
C
259 264anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
273 278first strand
Strand 2
C
284 289anti-parallel
Strand 3
C
294 298anti-parallel
Strand 4
C
304 308anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
3 7first strand
Strand 2
E
17 25anti-parallel
Strand 3
E
78 84anti-parallel
Strand 4
E
68 73anti-parallel
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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
58 60first strand
Strand 2
E
45 51anti-parallel
Strand 3
E
34 39anti-parallel
Strand 4
E
92 98anti-parallel
Strand 5
E
122 124anti-parallel
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