Analysis of interatomic Contacts of Structural Units in PDB entry:
8KGL

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8KGL entry

There are 2 chains in PDB entry 8KGL (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 701	HIS 1192
B	ASP 701	HIS 1192

There are 42 helices in PDB entry 8KGL. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	701	707	Right-handed alpha
Helix 2	AA2	A	715	729	Right-handed alpha
Helix 3	AA3	A	737	749	Right-handed alpha
Helix 4	AA4	A	754	765	Right-handed alpha
Helix 5	AA5	A	806	814	Right-handed alpha
Helix 6	AA6	A	816	820	Right-handed 310
Helix 7	AA7	A	826	830	Right-handed 310
Helix 8	AA8	A	842	846	Right-handed 310
Helix 9	AA9	A	865	877	Right-handed alpha
Helix 10	AB1	A	882	893	Right-handed alpha
Helix 11	AB2	A	942	951	Right-handed alpha
Helix 12	AB3	A	981	990	Right-handed alpha
Helix 13	AB4	A	997	1003	Right-handed alpha
Helix 14	AB5	A	1027	1070	Right-handed alpha
Helix 15	AB6	A	1070	1075	Right-handed alpha
Helix 16	AB7	A	1081	1092	Right-handed alpha
Helix 17	AB8	A	1098	1104	Right-handed alpha
Helix 18	AB9	A	1109	1116	Right-handed alpha
Helix 19	AC1	A	1122	1126	Right-handed 310
Helix 20	AC2	A	1134	1159	Right-handed alpha
Helix 21	AC3	A	1166	1186	Right-handed alpha
Helix 22	AC4	B	702	707	Right-handed alpha
Helix 23	AC5	B	715	729	Right-handed alpha
Helix 24	AC6	B	737	749	Right-handed alpha
Helix 25	AC7	B	754	766	Right-handed alpha
Helix 26	AC8	B	806	814	Right-handed alpha
Helix 27	AC9	B	816	820	Right-handed 310
Helix 28	AD1	B	842	846	Right-handed 310
Helix 29	AD2	B	865	877	Right-handed alpha
Helix 30	AD3	B	882	893	Right-handed alpha
Helix 31	AD4	B	942	951	Right-handed alpha
Helix 32	AD5	B	981	990	Right-handed alpha
Helix 33	AD6	B	997	1003	Right-handed alpha
Helix 34	AD7	B	1027	1070	Right-handed alpha
Helix 35	AD8	B	1070	1075	Right-handed alpha
Helix 36	AD9	B	1081	1092	Right-handed alpha
Helix 37	AE1	B	1098	1104	Right-handed alpha
Helix 38	AE2	B	1109	1116	Right-handed alpha
Helix 39	AE3	B	1122	1126	Right-handed 310
Helix 40	AE4	B	1130	1133	Right-handed 310
Helix 41	AE5	B	1134	1159	Right-handed alpha
Helix 42	AE6	B	1166	1188	Right-handed alpha

There are 10 sheets in PDB entry 8KGL. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	779	782	first strand
Strand 2	A	802	805	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	849	851	first strand
Strand 2	A	858	860	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	909	913	first strand
Strand 2	A	916	920	anti-parallel
Strand 3	A	1006	1008	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	923	926	first strand
Strand 2	A	931	934	anti-parallel
Strand 3	A	974	978	anti-parallel
Strand 4	A	960	965	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1014	1016	first strand
Strand 2	A	1022	1024	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	779	782	first strand
Strand 2	B	802	805	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	849	851	first strand
Strand 2	B	858	860	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	909	913	first strand
Strand 2	B	916	920	anti-parallel
Strand 3	B	1006	1008	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	923	926	first strand
Strand 2	B	931	934	anti-parallel
Strand 3	B	974	978	anti-parallel
Strand 4	B	960	965	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1014	1016	first strand
Strand 2	B	1022	1024	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8KGL

Analysis of interatomic Contacts of Structural Units in PDB entry:
8KGL