Analysis of interatomic Contacts of Structural Units in PDB entry:
8KGP

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8KGP entry

There are 2 chains in PDB entry 8KGP (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	VAL 415	HIS 1192
A	VAL 415	HIS 1192

There are 63 helices in PDB entry 8KGP. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	441	451	Right-handed alpha
Helix 2	AA2	B	506	513	Right-handed alpha
Helix 3	AA3	B	543	560	Right-handed alpha
Helix 4	AA4	B	560	565	Right-handed alpha
Helix 5	AA5	B	593	601	Right-handed alpha
Helix 6	AA6	B	616	620	Right-handed 310
Helix 7	AA7	B	621	629	Right-handed alpha
Helix 8	AA8	B	632	634	Right-handed 310
Helix 9	AA9	B	644	653	Right-handed alpha
Helix 10	AB1	B	656	664	Right-handed alpha
Helix 11	AB2	B	672	683	Right-handed alpha
Helix 12	AB3	B	687	695	Right-handed alpha
Helix 13	AB4	B	695	703	Right-handed alpha
Helix 14	AB5	B	715	729	Right-handed alpha
Helix 15	AB6	B	738	749	Right-handed alpha
Helix 16	AB7	B	755	766	Right-handed alpha
Helix 17	AB8	B	787	791	Right-handed 310
Helix 18	AB9	B	809	814	Right-handed alpha
Helix 19	AC1	B	815	819	Right-handed 310
Helix 20	AC2	B	864	877	Right-handed alpha
Helix 21	AC3	B	882	888	Right-handed 310
Helix 22	AC4	B	942	953	Right-handed alpha
Helix 23	AC5	B	953	958	Right-handed alpha
Helix 24	AC6	B	982	990	Right-handed alpha
Helix 25	AC7	B	998	1003	Right-handed alpha
Helix 26	AC8	B	1028	1070	Right-handed alpha
Helix 27	AC9	B	1081	1092	Right-handed alpha
Helix 28	AD1	B	1098	1104	Right-handed alpha
Helix 29	AD2	B	1109	1117	Right-handed alpha
Helix 30	AD3	B	1134	1159	Right-handed alpha
Helix 31	AD4	B	1166	1186	Right-handed alpha
Helix 32	AD5	A	440	451	Right-handed alpha
Helix 33	AD6	A	506	513	Right-handed alpha
Helix 34	AD7	A	543	560	Right-handed alpha
Helix 35	AD8	A	560	565	Right-handed alpha
Helix 36	AD9	A	593	601	Right-handed alpha
Helix 37	AE1	A	616	620	Right-handed 310
Helix 38	AE2	A	621	629	Right-handed alpha
Helix 39	AE3	A	632	634	Right-handed 310
Helix 40	AE4	A	644	653	Right-handed alpha
Helix 41	AE5	A	656	664	Right-handed alpha
Helix 42	AE6	A	672	683	Right-handed alpha
Helix 43	AE7	A	687	695	Right-handed alpha
Helix 44	AE8	A	695	703	Right-handed alpha
Helix 45	AE9	A	715	729	Right-handed alpha
Helix 46	AF1	A	738	749	Right-handed alpha
Helix 47	AF2	A	755	765	Right-handed alpha
Helix 48	AF3	A	787	791	Right-handed 310
Helix 49	AF4	A	809	814	Right-handed alpha
Helix 50	AF5	A	815	819	Right-handed 310
Helix 51	AF6	A	864	877	Right-handed alpha
Helix 52	AF7	A	882	888	Right-handed 310
Helix 53	AF8	A	942	953	Right-handed alpha
Helix 54	AF9	A	953	958	Right-handed alpha
Helix 55	AG1	A	982	990	Right-handed alpha
Helix 56	AG2	A	998	1003	Right-handed alpha
Helix 57	AG3	A	1028	1070	Right-handed alpha
Helix 58	AG4	A	1075	1079	Right-handed 310
Helix 59	AG5	A	1081	1092	Right-handed alpha
Helix 60	AG6	A	1098	1104	Right-handed alpha
Helix 61	AG7	A	1109	1117	Right-handed alpha
Helix 62	AG8	A	1134	1159	Right-handed alpha
Helix 63	AG9	A	1166	1186	Right-handed alpha

There are 14 sheets in PDB entry 8KGP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	465	469	first strand
Strand 2	B	433	437	parallel
Strand 3	B	533	537	parallel
Strand 4	B	569	572	parallel
Strand 5	B	636	640	anti-parallel
Strand 6	B	684	686	parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	588	590	first strand
Strand 2	B	577	581	anti-parallel
Strand 3	B	609	613	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	736	737	first strand
Strand 2	B	802	805	anti-parallel
Strand 3	B	779	780	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	824	827	first strand
Strand 2	B	830	834	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	909	913	first strand
Strand 2	B	916	920	anti-parallel
Strand 3	B	1006	1008	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	922	925	first strand
Strand 2	B	931	936	anti-parallel
Strand 3	B	974	978	anti-parallel
Strand 4	B	960	965	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1013	1015	first strand
Strand 2	B	1023	1025	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	465	469	first strand
Strand 2	A	433	437	parallel
Strand 3	A	533	537	parallel
Strand 4	A	569	572	parallel
Strand 5	A	636	640	anti-parallel
Strand 6	A	684	686	parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	588	590	first strand
Strand 2	A	577	581	anti-parallel
Strand 3	A	609	613	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	736	737	first strand
Strand 2	A	802	805	anti-parallel
Strand 3	A	779	780	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	824	827	first strand
Strand 2	A	830	834	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	909	913	first strand
Strand 2	A	916	920	anti-parallel
Strand 3	A	1006	1008	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	922	925	first strand
Strand 2	A	931	936	anti-parallel
Strand 3	A	974	978	anti-parallel
Strand 4	A	960	965	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1013	1015	first strand
Strand 2	A	1023	1025	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8KGP

Analysis of interatomic Contacts of Structural Units in PDB entry:
8KGP