Analysis of interatomic Contacts of Structural Units in PDB entry:
8KGV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8KGV entry

There is 1 chain in PDB entry 8KGV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 CYS 23LYS 632
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 25 helices in PDB entry 8KGV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
26 29Right-handed 310
Helix 2
AA2
A
30 63Right-handed alpha
Helix 3
AA3
A
69 91Right-handed alpha
Helix 4
AA4
A
96 121Right-handed alpha
Helix 5
AA5
A
169 185Right-handed alpha
Helix 6
AA6
A
186 199Right-handed alpha
Helix 7
AA7
A
203 217Right-handed alpha
Helix 8
AA8
A
217 230Right-handed alpha
Helix 9
AA9
A
256 273Right-handed alpha
Helix 10
AB1
A
274 278Right-handed 310
Helix 11
AB2
A
310 314Right-handed alpha
Helix 12
AB3
A
314 324Right-handed alpha
Helix 13
AB4
A
325 357Right-handed alpha
Helix 14
AB5
A
360 390Right-handed alpha
Helix 15
AB6
A
395 413Right-handed alpha
Helix 16
AB7
A
413 418Right-handed alpha
Helix 17
AB8
A
442 447Right-handed alpha
Helix 18
AB9
A
468 473Right-handed alpha
Helix 19
AC1
A
511 513Right-handed 310
Helix 20
AC2
A
514 531Right-handed alpha
Helix 21
AC3
A
532 544Right-handed alpha
Helix 22
AC4
A
545 547Right-handed 310
Helix 23
AC5
A
548 564Right-handed alpha
Helix 24
AC6
A
566 579Right-handed alpha
Helix 25
AC7
A
598 632Right-handed alpha
Back to top of page

There are 2 sheets in PDB entry 8KGV. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
465 466first strand
Strand 2
A
458 460anti-parallel
Strand 3
A
502 503anti-parallel
Strand 4
A
488 492anti-parallel
Strand 5
A
474 477anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
580 585first strand
Strand 2
A
591 597anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il