Analysis of interatomic Contacts of Structural Units in PDB entry:
8KGW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8KGW entry

There is 1 chain in PDB entry 8KGW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 24LYS 629
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 30 helices in PDB entry 8KGW. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
26 29Right-handed 310
Helix 2
AA2
A
30 64Right-handed alpha
Helix 3
AA3
A
68 91Right-handed alpha
Helix 4
AA4
A
92 94Right-handed 310
Helix 5
AA5
A
96 114Right-handed alpha
Helix 6
AA6
A
116 122Right-handed alpha
Helix 7
AA7
A
169 184Right-handed alpha
Helix 8
AA8
A
186 199Right-handed alpha
Helix 9
AA9
A
202 215Right-handed alpha
Helix 10
AB1
A
217 229Right-handed alpha
Helix 11
AB2
A
230 232Right-handed 310
Helix 12
AB3
A
256 273Right-handed alpha
Helix 13
AB4
A
274 278Right-handed 310
Helix 14
AB5
A
307 312Right-handed alpha
Helix 15
AB6
A
314 325Right-handed alpha
Helix 16
AB7
A
325 334Right-handed alpha
Helix 17
AB8
A
337 348Right-handed alpha
Helix 18
AB9
A
348 358Right-handed alpha
Helix 19
AC1
A
360 390Right-handed alpha
Helix 20
AC2
A
395 411Right-handed alpha
Helix 21
AC3
A
412 417Right-handed 310
Helix 22
AC4
A
444 448Right-handed 310
Helix 23
AC5
A
468 473Right-handed alpha
Helix 24
AC6
A
511 513Right-handed 310
Helix 25
AC7
A
514 530Right-handed alpha
Helix 26
AC8
A
532 544Right-handed alpha
Helix 27
AC9
A
545 547Right-handed 310
Helix 28
AD1
A
548 564Right-handed alpha
Helix 29
AD2
A
566 578Right-handed alpha
Helix 30
AD3
A
598 629Right-handed alpha
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There are 2 sheets in PDB entry 8KGW. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
476 477first strand
Strand 2
A
488 490anti-parallel
Strand 3
A
501 503anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
580 585first strand
Strand 2
A
591 597anti-parallel
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