Analysis of interatomic Contacts of Structural Units in PDB entry:
8KGY

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8KGY entry

There are 6 chains in PDB entry 8KGY (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 64	PHE 557
B	PRO 64	PHE 557
C	PRO 64	PHE 557
D	PRO 64	PHE 557
E	PRO 64	PHE 557
F	PRO 64	PHE 557

There are129 helices in PDB entry 8KGY. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	65	88	Right-handed alpha
Helix 2	AA2	A	98	103	Right-handed alpha
Helix 3	AA3	A	103	110	Right-handed alpha
Helix 4	AA4	A	157	175	Right-handed alpha
Helix 5	AA5	A	189	193	Right-handed 310
Helix 6	AA6	A	194	212	Right-handed alpha
Helix 7	AA7	A	229	244	Right-handed alpha
Helix 8	AA8	A	250	254	Right-handed 310
Helix 9	AA9	A	259	263	Right-handed 310
Helix 10	AB1	A	270	285	Right-handed alpha
Helix 11	AB2	A	286	294	Right-handed alpha
Helix 12	AB3	A	310	323	Right-handed alpha
Helix 13	AB4	A	344	355	Right-handed alpha
Helix 14	AB5	A	370	374	Right-handed 310
Helix 15	AB6	A	410	420	Right-handed alpha
Helix 16	AB7	A	426	431	Right-handed alpha
Helix 17	AB8	A	432	448	Right-handed alpha
Helix 18	AB9	A	455	476	Right-handed alpha
Helix 19	AC1	A	490	499	Right-handed alpha
Helix 20	AC2	A	501	528	Right-handed alpha
Helix 21	AC3	A	533	552	Right-handed alpha
Helix 22	AC4	B	65	88	Right-handed alpha
Helix 23	AC5	B	97	102	Right-handed 310
Helix 24	AC6	B	103	110	Right-handed alpha
Helix 25	AC7	B	157	175	Right-handed alpha
Helix 26	AC8	B	189	193	Right-handed 310
Helix 27	AC9	B	194	212	Right-handed alpha
Helix 28	AD1	B	229	244	Right-handed alpha
Helix 29	AD2	B	250	254	Right-handed 310
Helix 30	AD3	B	259	263	Right-handed 310
Helix 31	AD4	B	270	285	Right-handed alpha
Helix 32	AD5	B	286	294	Right-handed alpha
Helix 33	AD6	B	310	323	Right-handed alpha
Helix 34	AD7	B	344	355	Right-handed alpha
Helix 35	AD8	B	370	374	Right-handed 310
Helix 36	AD9	B	392	396	Right-handed 310
Helix 37	AE1	B	410	420	Right-handed alpha
Helix 38	AE2	B	426	431	Right-handed alpha
Helix 39	AE3	B	432	448	Right-handed alpha
Helix 40	AE4	B	455	476	Right-handed alpha
Helix 41	AE5	B	490	499	Right-handed alpha
Helix 42	AE6	B	501	528	Right-handed alpha
Helix 43	AE7	B	533	553	Right-handed alpha
Helix 44	AE8	C	65	87	Right-handed alpha
Helix 45	AE9	C	103	110	Right-handed alpha
Helix 46	AF1	C	157	175	Right-handed alpha
Helix 47	AF2	C	189	193	Right-handed 310
Helix 48	AF3	C	194	212	Right-handed alpha
Helix 49	AF4	C	229	244	Right-handed alpha
Helix 50	AF5	C	250	254	Right-handed 310
Helix 51	AF6	C	259	263	Right-handed 310
Helix 52	AF7	C	270	285	Right-handed alpha
Helix 53	AF8	C	286	294	Right-handed alpha
Helix 54	AF9	C	310	323	Right-handed alpha
Helix 55	AG1	C	344	355	Right-handed alpha
Helix 56	AG2	C	370	374	Right-handed 310
Helix 57	AG3	C	392	396	Right-handed 310
Helix 58	AG4	C	410	420	Right-handed alpha
Helix 59	AG5	C	426	431	Right-handed alpha
Helix 60	AG6	C	432	448	Right-handed alpha
Helix 61	AG7	C	455	479	Right-handed alpha
Helix 62	AG8	C	490	499	Right-handed alpha
Helix 63	AG9	C	501	528	Right-handed alpha
Helix 64	AH1	C	533	554	Right-handed alpha
Helix 65	AH2	D	65	89	Right-handed alpha
Helix 66	AH3	D	98	103	Right-handed alpha
Helix 67	AH4	D	103	110	Right-handed alpha
Helix 68	AH5	D	157	175	Right-handed alpha
Helix 69	AH6	D	189	193	Right-handed 310
Helix 70	AH7	D	194	212	Right-handed alpha
Helix 71	AH8	D	229	244	Right-handed alpha
Helix 72	AH9	D	250	254	Right-handed 310
Helix 73	AI1	D	259	263	Right-handed 310
Helix 74	AI2	D	270	285	Right-handed alpha
Helix 75	AI3	D	286	294	Right-handed alpha
Helix 76	AI4	D	310	323	Right-handed alpha
Helix 77	AI5	D	344	355	Right-handed alpha
Helix 78	AI6	D	370	374	Right-handed 310
Helix 79	AI7	D	392	396	Right-handed 310
Helix 80	AI8	D	410	420	Right-handed alpha
Helix 81	AI9	D	426	431	Right-handed alpha
Helix 82	AJ1	D	432	448	Right-handed alpha
Helix 83	AJ2	D	455	476	Right-handed alpha
Helix 84	AJ3	D	490	499	Right-handed alpha
Helix 85	AJ4	D	502	528	Right-handed alpha
Helix 86	AJ5	D	533	554	Right-handed alpha
Helix 87	AJ6	E	65	89	Right-handed alpha
Helix 88	AJ7	E	98	103	Right-handed alpha
Helix 89	AJ8	E	103	110	Right-handed alpha
Helix 90	AJ9	E	157	175	Right-handed alpha
Helix 91	AK1	E	189	193	Right-handed 310
Helix 92	AK2	E	194	212	Right-handed alpha
Helix 93	AK3	E	229	244	Right-handed alpha
Helix 94	AK4	E	250	254	Right-handed 310
Helix 95	AK5	E	259	263	Right-handed 310
Helix 96	AK6	E	270	285	Right-handed alpha
Helix 97	AK7	E	286	294	Right-handed alpha
Helix 98	AK8	E	310	323	Right-handed alpha
Helix 99	AK9	E	344	355	Right-handed alpha
Helix 100	AL1	E	370	374	Right-handed 310
Helix 101	AL2	E	410	420	Right-handed alpha
Helix 102	AL3	E	426	431	Right-handed alpha
Helix 103	AL4	E	432	448	Right-handed alpha
Helix 104	AL5	E	455	476	Right-handed alpha
Helix 105	AL6	E	490	499	Right-handed alpha
Helix 106	AL7	E	501	528	Right-handed alpha
Helix 107	AL8	E	533	554	Right-handed alpha
Helix 108	AL9	F	65	88	Right-handed alpha
Helix 109	AM1	F	97	102	Right-handed 310
Helix 110	AM2	F	103	110	Right-handed alpha
Helix 111	AM3	F	157	175	Right-handed alpha
Helix 112	AM4	F	189	193	Right-handed 310
Helix 113	AM5	F	194	212	Right-handed alpha
Helix 114	AM6	F	229	244	Right-handed alpha
Helix 115	AM7	F	250	254	Right-handed 310
Helix 116	AM8	F	259	263	Right-handed 310
Helix 117	AM9	F	270	285	Right-handed alpha
Helix 118	AN1	F	286	294	Right-handed alpha
Helix 119	AN2	F	310	323	Right-handed alpha
Helix 120	AN3	F	344	355	Right-handed alpha
Helix 121	AN4	F	370	374	Right-handed 310
Helix 122	AN5	F	392	396	Right-handed 310
Helix 123	AN6	F	410	420	Right-handed alpha
Helix 124	AN7	F	426	431	Right-handed alpha
Helix 125	AN8	F	432	448	Right-handed alpha
Helix 126	AN9	F	455	476	Right-handed alpha
Helix 127	AO1	F	490	499	Right-handed alpha
Helix 128	AO2	F	501	528	Right-handed alpha
Helix 129	AO3	F	533	553	Right-handed alpha

There are 9 sheets in PDB entry 8KGY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	220	223	first strand
Strand 2	A	146	152	parallel
Strand 3	A	182	186	parallel
Strand 4	A	129	138	anti-parallel
Strand 5	A	114	123	anti-parallel
Strand 6	E	114	123	anti-parallel
Strand 7	E	129	138	anti-parallel
Strand 8	E	182	186	anti-parallel
Strand 9	E	146	152	parallel
Strand 10	E	220	223	parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	337	338	first strand
Strand 2	A	326	331	anti-parallel
Strand 3	A	303	307	parallel
Strand 4	A	378	380	parallel
Strand 5	A	400	402	parallel
Strand 6	A	423	425	parallel

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There are 10 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	220	223	first strand
Strand 2	B	146	152	parallel
Strand 3	B	182	186	parallel
Strand 4	B	129	138	anti-parallel
Strand 5	B	114	123	anti-parallel
Strand 6	D	114	122	anti-parallel
Strand 7	D	130	138	anti-parallel
Strand 8	D	182	186	anti-parallel
Strand 9	D	146	152	parallel
Strand 10	D	220	223	parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	325	331	first strand
Strand 2	B	302	307	parallel
Strand 3	B	378	381	parallel
Strand 4	B	400	402	parallel
Strand 5	B	423	425	parallel

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There are 10 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	220	223	first strand
Strand 2	C	146	152	parallel
Strand 3	C	182	186	parallel
Strand 4	C	129	138	anti-parallel
Strand 5	C	114	123	anti-parallel
Strand 6	F	114	123	anti-parallel
Strand 7	F	129	138	anti-parallel
Strand 8	F	182	186	anti-parallel
Strand 9	F	146	152	parallel
Strand 10	F	220	223	parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	337	338	first strand
Strand 2	C	326	330	anti-parallel
Strand 3	C	303	306	parallel
Strand 4	C	378	380	parallel
Strand 5	C	400	402	parallel
Strand 6	C	423	425	parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	337	338	first strand
Strand 2	D	326	331	anti-parallel
Strand 3	D	303	307	parallel
Strand 4	D	378	380	parallel
Strand 5	D	400	402	parallel
Strand 6	D	423	425	parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	337	338	first strand
Strand 2	E	326	331	anti-parallel
Strand 3	E	303	307	parallel
Strand 4	E	378	381	parallel
Strand 5	E	400	402	parallel
Strand 6	E	423	425	parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	337	338	first strand
Strand 2	F	326	331	anti-parallel
Strand 3	F	303	307	parallel
Strand 4	F	378	381	parallel
Strand 5	F	400	402	parallel
Strand 6	F	423	425	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8KGY

Analysis of interatomic Contacts of Structural Units in PDB entry:
8KGY