Analysis of interatomic Contacts of Structural Units in PDB entry:
8KGZ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8KGZ entry

There are 2 chains in PDB entry 8KGZ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 28GLU 273
B
 GLY 28GLU 273
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 6 helices in PDB entry 8KGZ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
88 93Right-handed alpha
Helix 2
AA2
A
114 118Right-handed 310
Helix 3
AA3
A
241 245Right-handed 310
Helix 4
AA4
B
88 93Right-handed alpha
Helix 5
AA5
B
114 118Right-handed 310
Helix 6
AA6
B
241 245Right-handed 310
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There are 10 sheets in PDB entry 8KGZ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
31 35first strand
Strand 2
A
46 53anti-parallel
Strand 3
A
105 110anti-parallel
Strand 4
A
95 100anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
39 40first strand
Strand 2
A
139 143parallel
Strand 3
A
119 126anti-parallel
Strand 4
A
61 67anti-parallel
Strand 5
A
74 79anti-parallel
Strand 6
A
85 87anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
169 173first strand
Strand 2
A
265 270parallel
Strand 3
A
246 253anti-parallel
Strand 4
A
195 200anti-parallel
Strand 5
A
207 210anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
169 173first strand
Strand 2
A
265 270parallel
Strand 3
A
246 253anti-parallel
Strand 4
A
259 261anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
178 183first strand
Strand 2
A
232 237anti-parallel
Strand 3
A
224 229anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
31 35first strand
Strand 2
B
46 53anti-parallel
Strand 3
B
105 110anti-parallel
Strand 4
B
95 100anti-parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
85 87first strand
Strand 2
B
74 79anti-parallel
Strand 3
B
61 67anti-parallel
Strand 4
B
119 126anti-parallel
Strand 5
B
139 141anti-parallel
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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
169 173first strand
Strand 2
B
265 270parallel
Strand 3
B
247 254anti-parallel
Strand 4
B
195 200anti-parallel
Strand 5
B
207 211anti-parallel
Strand 6
B
215 216anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
169 173first strand
Strand 2
B
265 270parallel
Strand 3
B
247 254anti-parallel
Strand 4
B
258 261anti-parallel
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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
178 183first strand
Strand 2
B
232 237anti-parallel
Strand 3
B
224 229anti-parallel
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