Analysis of interatomic Contacts of Structural Units in PDB entry:
8KH5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8KH5 entry

There are 5 chains in PDB entry 8KH5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 15SER 304
B
 GLN 12LEU 394
C
 GLU 3ASN 340
E
 GLN 1SER 128
D
 SER 8ARG 62
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 26 helices in PDB entry 8KH5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
15 51Right-handed alpha
Helix 2
AA2
A
55 82Right-handed alpha
Helix 3
AA3
A
87 122Right-handed alpha
Helix 4
AA4
A
122 127Right-handed alpha
Helix 5
AA5
A
133 149Right-handed alpha
Helix 6
AA6
A
150 156Right-handed alpha
Helix 7
AA7
A
178 213Right-handed alpha
Helix 8
AA8
A
223 258Right-handed alpha
Helix 9
AA9
A
263 294Right-handed alpha
Helix 10
AB1
A
296 303Right-handed alpha
Helix 11
AB2
B
13 39Right-handed alpha
Helix 12
AB3
B
52 60Right-handed alpha
Helix 13
AB4
B
231 236Right-handed alpha
Helix 14
AB5
B
265 279Right-handed alpha
Helix 15
AB6
B
293 304Right-handed alpha
Helix 16
AB7
B
307 312Right-handed alpha
Helix 17
AB8
B
313 318Right-handed 310
Helix 18
AB9
B
331 352Right-handed alpha
Helix 19
AC1
B
370 391Right-handed alpha
Helix 20
AC2
C
4 26Right-handed alpha
Helix 21
AC3
C
29 35Right-handed alpha
Helix 22
AC4
E
28 32Right-handed 310
Helix 23
AC5
E
87 91Right-handed 310
Helix 24
AC6
D
9 25Right-handed alpha
Helix 25
AC7
D
29 44Right-handed alpha
Helix 26
AC8
D
55 59Right-handed 310
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There are 10 sheets in PDB entry 8KH5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
209 214first strand
Strand 2
B
217 223anti-parallel
Strand 3
B
40 46parallel
Strand 4
B
243 249parallel
Strand 5
B
286 292parallel
Strand 6
B
359 363parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
47 52first strand
Strand 2
C
335 339anti-parallel
Strand 3
C
327 331anti-parallel
Strand 4
C
315 320anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
58 63first strand
Strand 2
C
69 74anti-parallel
Strand 3
C
78 83anti-parallel
Strand 4
C
88 94anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
100 105first strand
Strand 2
C
111 116anti-parallel
Strand 3
C
121 125anti-parallel
Strand 4
C
134 139anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
146 151first strand
Strand 2
C
156 161anti-parallel
Strand 3
C
165 170anti-parallel
Strand 4
C
176 181anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
187 192first strand
Strand 2
C
198 203anti-parallel
Strand 3
C
208 212anti-parallel
Strand 4
C
218 222anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
229 234first strand
Strand 2
C
240 245anti-parallel
Strand 3
C
250 254anti-parallel
Strand 4
C
259 264anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
273 278first strand
Strand 2
C
284 289anti-parallel
Strand 3
C
294 298anti-parallel
Strand 4
C
304 308anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
3 7first strand
Strand 2
E
17 25anti-parallel
Strand 3
E
78 84anti-parallel
Strand 4
E
68 73anti-parallel
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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
10 12first strand
Strand 2
E
122 126parallel
Strand 3
E
92 98anti-parallel
Strand 4
E
34 39anti-parallel
Strand 5
E
45 51anti-parallel
Strand 6
E
58 60anti-parallel
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