Analysis of interatomic Contacts of Structural Units in PDB entry:
8KHG


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8KHG entry

There are 2 chains in PDB entry 8KHG (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 5ASP 275
B
 PHE 6ASP 275
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 8KHG. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
21 33Right-handed alpha
Helix 2
AA2
A
46 51Right-handed 310
Helix 3
AA3
A
57 61Right-handed 310
Helix 4
AA4
A
170 181Right-handed alpha
Helix 5
AA5
A
185 189Right-handed 310
Helix 6
AA6
A
190 197Right-handed alpha
Helix 7
AA7
A
206 222Right-handed alpha
Helix 8
AA8
B
21 33Right-handed alpha
Helix 9
AA9
B
46 51Right-handed 310
Helix 10
AB1
B
57 61Right-handed 310
Helix 11
AB2
B
170 181Right-handed alpha
Helix 12
AB3
B
185 189Right-handed 310
Helix 13
AB4
B
190 197Right-handed alpha
Helix 14
AB5
B
206 222Right-handed alpha
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There are 4 sheets in PDB entry 8KHG. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
13 19first strand
Strand 2
A
99 114anti-parallel
Strand 3
A
117 130anti-parallel
Strand 4
A
133 145anti-parallel
Strand 5
A
80 90anti-parallel
Strand 6
A
227 234anti-parallel
Strand 7
A
265 274anti-parallel
Strand 8
A
255 262anti-parallel
Strand 9
A
244 252anti-parallel
Strand 10
A
163 167anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
204 205first strand
Strand 2
A
238 239anti-parallel
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There are 10 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
13 19first strand
Strand 2
B
99 114anti-parallel
Strand 3
B
117 130anti-parallel
Strand 4
B
133 144anti-parallel
Strand 5
B
83 90anti-parallel
Strand 6
B
227 234anti-parallel
Strand 7
B
265 274anti-parallel
Strand 8
B
255 262anti-parallel
Strand 9
B
244 252anti-parallel
Strand 10
B
163 167anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
204 205first strand
Strand 2
B
238 239anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il