Analysis of interatomic Contacts of Structural Units in PDB entry:
8KHL


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8KHL entry

There are 3 chains in PDB entry 8KHL (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1GLY 275
B
 MET 1GLY 275
C
 MET 1GLY 272
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 42 helices in PDB entry 8KHL. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
18 26Right-handed alpha
Helix 2
AA2
A
40 42Right-handed 310
Helix 3
AA3
A
43 58Right-handed alpha
Helix 4
AA4
A
74 85Right-handed alpha
Helix 5
AA5
A
98 110Right-handed alpha
Helix 6
AA6
A
119 125Right-handed alpha
Helix 7
AA7
A
125 131Right-handed alpha
Helix 8
AA8
A
141 149Right-handed alpha
Helix 9
AA9
A
155 176Right-handed alpha
Helix 10
AB1
A
191 205Right-handed alpha
Helix 11
AB2
A
214 216Right-handed 310
Helix 12
AB3
A
217 226Right-handed alpha
Helix 13
AB4
A
228 245Right-handed alpha
Helix 14
AB5
A
257 271Right-handed alpha
Helix 15
AB6
B
18 26Right-handed alpha
Helix 16
AB7
B
40 42Right-handed 310
Helix 17
AB8
B
43 58Right-handed alpha
Helix 18
AB9
B
74 85Right-handed alpha
Helix 19
AC1
B
98 110Right-handed alpha
Helix 20
AC2
B
119 125Right-handed alpha
Helix 21
AC3
B
125 131Right-handed alpha
Helix 22
AC4
B
141 149Right-handed alpha
Helix 23
AC5
B
155 177Right-handed alpha
Helix 24
AC6
B
191 205Right-handed alpha
Helix 25
AC7
B
214 216Right-handed 310
Helix 26
AC8
B
217 226Right-handed alpha
Helix 27
AC9
B
228 244Right-handed alpha
Helix 28
AD1
B
257 271Right-handed alpha
Helix 29
AD2
C
18 26Right-handed alpha
Helix 30
AD3
C
40 42Right-handed 310
Helix 31
AD4
C
43 58Right-handed alpha
Helix 32
AD5
C
74 85Right-handed alpha
Helix 33
AD6
C
98 110Right-handed alpha
Helix 34
AD7
C
119 125Right-handed alpha
Helix 35
AD8
C
125 132Right-handed alpha
Helix 36
AD9
C
141 149Right-handed alpha
Helix 37
AE1
C
155 176Right-handed alpha
Helix 38
AE2
C
191 205Right-handed alpha
Helix 39
AE3
C
214 216Right-handed 310
Helix 40
AE4
C
217 226Right-handed alpha
Helix 41
AE5
C
228 244Right-handed alpha
Helix 42
AE6
C
257 271Right-handed alpha
Back to top of page

There are 6 sheets in PDB entry 8KHL. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
8 13first strand
Strand 2
A
30 34parallel
Strand 3
A
63 66parallel
Strand 4
A
88 93parallel
Strand 5
A
113 117parallel
Strand 6
A
139 140parallel
Strand 7
A
182 183parallel
Strand 8
A
209 212parallel
Strand 9
A
8 13parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
249 251first strand
Strand 2
A
254 256anti-parallel
Back to list of sheets
Back to top of page

There are 9 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
8 13first strand
Strand 2
B
30 34parallel
Strand 3
B
63 66parallel
Strand 4
B
88 93parallel
Strand 5
B
113 117parallel
Strand 6
B
139 140parallel
Strand 7
B
182 183parallel
Strand 8
B
209 212parallel
Strand 9
B
8 13parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
249 251first strand
Strand 2
B
254 256anti-parallel
Back to list of sheets
Back to top of page

There are 9 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
8 13first strand
Strand 2
C
30 34parallel
Strand 3
C
63 66parallel
Strand 4
C
88 93parallel
Strand 5
C
113 117parallel
Strand 6
C
139 140parallel
Strand 7
C
182 183parallel
Strand 8
C
209 212parallel
Strand 9
C
8 13parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
249 251first strand
Strand 2
C
254 256anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il