Analysis of interatomic Contacts of Structural Units in PDB entry:
8KHP

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8KHP entry

There are 6 chains in PDB entry 8KHP (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	VAL 23	GLU 600
B	VAL 23	GLU 600
C	ARG 17	ALA 768
D	LYS 15	ALA 768
E	ALA 34	LYS 105
F	LEU 32	TYR 106

There are112 helices in PDB entry 8KHP. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	32	47	Right-handed alpha
Helix 2	AA2	A	64	72	Right-handed alpha
Helix 3	AA3	A	73	81	Right-handed alpha
Helix 4	AA4	A	83	88	Right-handed 310
Helix 5	AA5	A	97	111	Right-handed alpha
Helix 6	AA6	A	119	130	Right-handed alpha
Helix 7	AA7	A	132	145	Right-handed alpha
Helix 8	AA8	A	151	162	Right-handed alpha
Helix 9	AA9	A	170	178	Right-handed alpha
Helix 10	AB1	A	178	184	Right-handed alpha
Helix 11	AB2	A	185	191	Right-handed 310
Helix 12	AB3	A	192	202	Right-handed alpha
Helix 13	AB4	A	211	222	Right-handed alpha
Helix 14	AB5	A	223	228	Right-handed alpha
Helix 15	AB6	A	238	244	Right-handed 310
Helix 16	AB7	A	245	249	Right-handed 310
Helix 17	AB8	A	250	252	Right-handed 310
Helix 18	AB9	A	253	261	Right-handed alpha
Helix 19	AC1	A	265	278	Right-handed alpha
Helix 20	AC2	A	288	292	Right-handed 310
Helix 21	AC3	A	502	506	Right-handed 310
Helix 22	AC4	A	594	600	Right-handed alpha
Helix 23	AC5	B	31	47	Right-handed alpha
Helix 24	AC6	B	64	70	Right-handed alpha
Helix 25	AC7	B	73	81	Right-handed alpha
Helix 26	AC8	B	83	88	Right-handed 310
Helix 27	AC9	B	97	111	Right-handed alpha
Helix 28	AD1	B	119	131	Right-handed alpha
Helix 29	AD2	B	132	146	Right-handed alpha
Helix 30	AD3	B	148	150	Right-handed 310
Helix 31	AD4	B	151	162	Right-handed alpha
Helix 32	AD5	B	164	178	Right-handed alpha
Helix 33	AD6	B	178	185	Right-handed alpha
Helix 34	AD7	B	186	191	Right-handed alpha
Helix 35	AD8	B	192	202	Right-handed alpha
Helix 36	AD9	B	209	222	Right-handed alpha
Helix 37	AE1	B	223	228	Right-handed alpha
Helix 38	AE2	B	239	244	Right-handed 310
Helix 39	AE3	B	245	249	Right-handed 310
Helix 40	AE4	B	250	261	Right-handed alpha
Helix 41	AE5	B	264	278	Right-handed alpha
Helix 42	AE6	B	279	283	Right-handed 310
Helix 43	AE7	B	288	292	Right-handed 310
Helix 44	AE8	B	502	506	Right-handed 310
Helix 45	AE9	B	594	599	Right-handed alpha
Helix 46	AF1	C	28	46	Right-handed alpha
Helix 47	AF2	C	53	67	Right-handed alpha
Helix 48	AF3	C	69	88	Right-handed alpha
Helix 49	AF4	C	88	94	Right-handed alpha
Helix 50	AF5	C	95	97	Right-handed 310
Helix 51	AF6	C	100	123	Right-handed alpha
Helix 52	AF7	C	123	135	Right-handed alpha
Helix 53	AF8	C	138	151	Right-handed alpha
Helix 54	AF9	C	154	174	Right-handed alpha
Helix 55	AG1	C	180	194	Right-handed alpha
Helix 56	AG2	C	198	205	Right-handed alpha
Helix 57	AG3	C	205	228	Right-handed alpha
Helix 58	AG4	C	229	251	Right-handed alpha
Helix 59	AG5	C	253	255	Right-handed 310
Helix 60	AG6	C	256	270	Right-handed alpha
Helix 61	AG7	C	272	279	Right-handed alpha
Helix 62	AG8	C	283	291	Right-handed alpha
Helix 63	AG9	C	292	303	Right-handed alpha
Helix 64	AH1	C	308	329	Right-handed alpha
Helix 65	AH2	C	337	360	Right-handed alpha
Helix 66	AH3	C	363	379	Right-handed alpha
Helix 67	AH4	C	383	397	Right-handed alpha
Helix 68	AH5	C	404	422	Right-handed alpha
Helix 69	AH6	C	424	443	Right-handed alpha
Helix 70	AH7	C	447	463	Right-handed alpha
Helix 71	AH8	C	463	494	Right-handed alpha
Helix 72	AH9	C	525	543	Right-handed alpha
Helix 73	AI1	C	595	608	Right-handed alpha
Helix 74	AI2	C	612	621	Right-handed alpha
Helix 75	AI3	C	623	635	Right-handed alpha
Helix 76	AI4	C	684	715	Right-handed alpha
Helix 77	AI5	C	718	730	Right-handed alpha
Helix 78	AI6	C	737	751	Right-handed alpha
Helix 79	AI7	D	26	46	Right-handed alpha
Helix 80	AI8	D	54	67	Right-handed alpha
Helix 81	AI9	D	69	96	Right-handed alpha
Helix 82	AJ1	D	100	123	Right-handed alpha
Helix 83	AJ2	D	123	135	Right-handed alpha
Helix 84	AJ3	D	138	151	Right-handed alpha
Helix 85	AJ4	D	156	175	Right-handed alpha
Helix 86	AJ5	D	179	193	Right-handed alpha
Helix 87	AJ6	D	198	205	Right-handed alpha
Helix 88	AJ7	D	205	228	Right-handed alpha
Helix 89	AJ8	D	229	251	Right-handed alpha
Helix 90	AJ9	D	257	269	Right-handed alpha
Helix 91	AK1	D	272	278	Right-handed alpha
Helix 92	AK2	D	283	291	Right-handed alpha
Helix 93	AK3	D	293	306	Right-handed alpha
Helix 94	AK4	D	308	329	Right-handed alpha
Helix 95	AK5	D	337	361	Right-handed alpha
Helix 96	AK6	D	363	380	Right-handed alpha
Helix 97	AK7	D	383	396	Right-handed alpha
Helix 98	AK8	D	406	421	Right-handed alpha
Helix 99	AK9	D	424	442	Right-handed alpha
Helix 100	AL1	D	448	463	Right-handed alpha
Helix 101	AL2	D	463	494	Right-handed alpha
Helix 102	AL3	D	509	513	Right-handed 310
Helix 103	AL4	D	529	543	Right-handed alpha
Helix 104	AL5	D	598	608	Right-handed alpha
Helix 105	AL6	D	612	621	Right-handed alpha
Helix 106	AL7	D	623	636	Right-handed alpha
Helix 107	AL8	D	684	715	Right-handed alpha
Helix 108	AL9	D	718	732	Right-handed alpha
Helix 109	AM1	D	737	747	Right-handed alpha
Helix 110	AM2	D	748	752	Right-handed 310
Helix 111	AM3	E	80	89	Right-handed alpha
Helix 112	AM4	F	80	90	Right-handed alpha

There are 25 sheets in PDB entry 8KHP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	26	28	first strand
Strand 2	B	112	114	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	59	63	first strand
Strand 2	A	52	56	anti-parallel
Strand 3	A	90	92	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	112	114	first strand
Strand 2	B	26	28	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	298	301	first strand
Strand 2	A	589	592	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	345	346	first strand
Strand 2	A	351	353	anti-parallel
Strand 3	A	369	373	anti-parallel
Strand 4	A	378	382	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	393	395	first strand
Strand 2	A	401	404	anti-parallel
Strand 3	A	417	420	anti-parallel
Strand 4	A	425	428	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	440	444	first strand
Strand 2	A	447	451	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	453	455	first strand
Strand 2	A	458	460	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	464	467	first strand
Strand 2	A	472	475	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	487	491	first strand
Strand 2	A	494	498	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	517	518	first strand
Strand 2	A	523	524	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	538	542	first strand
Strand 2	A	545	549	anti-parallel
Strand 3	A	564	567	anti-parallel
Strand 4	A	572	575	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	552	553	first strand
Strand 2	A	558	559	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	59	63	first strand
Strand 2	B	52	56	anti-parallel
Strand 3	B	90	93	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	327	332	first strand
Strand 2	B	317	322	anti-parallel
Strand 3	B	297	303	anti-parallel
Strand 4	B	587	593	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	306	307	first strand
Strand 2	B	573	584	anti-parallel
Strand 3	B	558	566	anti-parallel
Strand 4	B	552	553	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	343	347	first strand
Strand 2	B	350	354	anti-parallel
Strand 3	B	371	372	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	394	397	first strand
Strand 2	B	400	403	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	417	420	first strand
Strand 2	B	425	428	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	440	443	first strand
Strand 2	B	448	451	anti-parallel
Strand 3	B	464	466	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	454	455	first strand
Strand 2	B	458	459	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	488	491	first strand
Strand 2	B	494	497	anti-parallel
Strand 3	B	515	518	anti-parallel
Strand 4	B	523	526	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	538	541	first strand
Strand 2	B	546	549	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	557	559	first strand
Strand 2	C	592	594	anti-parallel
Strand 3	C	672	673	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	557	559	first strand
Strand 2	D	592	594	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8KHP

Analysis of interatomic Contacts of Structural Units in PDB entry:
8KHP