Analysis of interatomic Contacts of Structural Units in PDB entry:
8KHS


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8KHS entry

There is 1 chain in PDB entry 8KHS (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1LEU 230
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 11 helices in PDB entry 8KHS. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
17 25Right-handed alpha
Helix 2
AA2
A
43 47Right-handed 310
Helix 3
AA3
A
66 82Right-handed alpha
Helix 4
AA4
A
89 99Right-handed alpha
Helix 5
AA5
A
119 124Right-handed alpha
Helix 6
AA6
A
127 131Right-handed 310
Helix 7
AA7
A
179 181Right-handed 310
Helix 8
AA8
A
182 190Right-handed alpha
Helix 9
AA9
A
190 197Right-handed alpha
Helix 10
AB1
A
200 210Right-handed alpha
Helix 11
AB2
A
211 230Right-handed alpha
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There are 2 sheets in PDB entry 8KHS. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
27 32first strand
Strand 2
A
2 7parallel
Strand 3
A
49 52parallel
Strand 4
A
85 88parallel
Strand 5
A
169 172parallel
Strand 6
A
162 165anti-parallel
Strand 7
A
150 154anti-parallel
Strand 8
A
117 118anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
103 115first strand
Strand 2
A
134 143anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il