Analysis of interatomic Contacts of Structural Units in PDB entry:
8KHV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8KHV entry

There is 1 chain in PDB entry 8KHV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 34SER 612
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 25 helices in PDB entry 8KHV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
46 57Right-handed alpha
Helix 2
AA2
A
57 76Right-handed alpha
Helix 3
AA3
A
89 111Right-handed alpha
Helix 4
AA4
A
112 128Right-handed alpha
Helix 5
AA5
A
133 136Right-handed 310
Helix 6
AA6
A
137 155Right-handed alpha
Helix 7
AA7
A
156 158Right-handed 310
Helix 8
AA8
A
159 174Right-handed alpha
Helix 9
AA9
A
174 179Right-handed alpha
Helix 10
AB1
A
184 189Right-handed 310
Helix 11
AB2
A
191 208Right-handed alpha
Helix 12
AB3
A
209 211Right-handed 310
Helix 13
AB4
A
212 227Right-handed alpha
Helix 14
AB5
A
227 232Right-handed alpha
Helix 15
AB6
A
233 235Right-handed 310
Helix 16
AB7
A
243 266Right-handed alpha
Helix 17
AB8
A
279 287Right-handed alpha
Helix 18
AB9
A
307 317Right-handed alpha
Helix 19
AC1
A
319 322Right-handed 310
Helix 20
AC2
A
323 333Right-handed alpha
Helix 21
AC3
A
334 339Right-handed alpha
Helix 22
AC4
A
343 350Right-handed alpha
Helix 23
AC5
A
426 433Right-handed alpha
Helix 24
AC6
A
444 457Right-handed 310
Helix 25
AC7
A
492 496Right-handed 310
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There are 3 sheets in PDB entry 8KHV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
366 369first strand
Strand 2
A
375 379anti-parallel
Strand 3
A
389 393anti-parallel
Strand 4
A
409 413anti-parallel
Strand 5
A
416 419anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
460 462first strand
Strand 2
A
527 535anti-parallel
Strand 3
A
587 595anti-parallel
Strand 4
A
569 571anti-parallel
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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
475 479first strand
Strand 2
A
484 490anti-parallel
Strand 3
A
501 509anti-parallel
Strand 4
A
513 521anti-parallel
Strand 5
A
600 609anti-parallel
Strand 6
A
554 562anti-parallel
Strand 7
A
546 551anti-parallel
Strand 8
A
538 543anti-parallel
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