Analysis of interatomic Contacts of Structural Units in PDB entry:
8KHW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8KHW entry

There is 1 chain in PDB entry 8KHW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 35MET 616
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 23 helices in PDB entry 8KHW. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
52 71Right-handed alpha
Helix 2
AA2
A
84 106Right-handed alpha
Helix 3
AA3
A
108 123Right-handed alpha
Helix 4
AA4
A
128 131Right-handed 310
Helix 5
AA5
A
132 149Right-handed alpha
Helix 6
AA6
A
154 169Right-handed alpha
Helix 7
AA7
A
171 175Right-handed 310
Helix 8
AA8
A
179 184Right-handed 310
Helix 9
AA9
A
186 203Right-handed alpha
Helix 10
AB1
A
204 206Right-handed 310
Helix 11
AB2
A
207 222Right-handed alpha
Helix 12
AB3
A
222 227Right-handed alpha
Helix 13
AB4
A
228 230Right-handed 310
Helix 14
AB5
A
238 240Right-handed 310
Helix 15
AB6
A
241 261Right-handed alpha
Helix 16
AB7
A
265 269Right-handed 310
Helix 17
AB8
A
271 273Right-handed 310
Helix 18
AB9
A
274 283Right-handed alpha
Helix 19
AC1
A
302 313Right-handed alpha
Helix 20
AC2
A
314 328Right-handed alpha
Helix 21
AC3
A
329 336Right-handed alpha
Helix 22
AC4
A
338 347Right-handed alpha
Helix 23
AC5
A
441 453Right-handed 310
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There are 3 sheets in PDB entry 8KHW. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
361 364first strand
Strand 2
A
371 375anti-parallel
Strand 3
A
384 389anti-parallel
Strand 4
A
405 409anti-parallel
Strand 5
A
412 415anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
456 458first strand
Strand 2
A
523 531anti-parallel
Strand 3
A
583 591anti-parallel
Strand 4
A
563 568anti-parallel
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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
470 475first strand
Strand 2
A
480 486anti-parallel
Strand 3
A
497 505anti-parallel
Strand 4
A
509 517anti-parallel
Strand 5
A
596 604anti-parallel
Strand 6
A
550 558anti-parallel
Strand 7
A
542 547anti-parallel
Strand 8
A
534 537anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il