Analysis of interatomic Contacts of Structural Units in PDB entry:
8KI3


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8KI3 entry

There are 28 chains in PDB entry 8KI3 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
THR 3GLU 509
B
ASP 24GLU 509
C
GLU 7PHE 508
D
ALA 11HIS 480
E
ALA 12LYS 475
F
ALA 12ALA 477
G
THR 2LEU 272
J
GLY 11LEU 45
O
ALA 2GLU 188
1
ASP 1MET 75
2
ASP 1MET 75
3
ASP 1MET 75
4
ASP 1MET 75
5
ASP 1MET 75
6
ASP 1MET 75
7
ASP 1MET 75
8
ASP 1MET 75
H
GLN 15GLU 146
I
VAL 2VAL 46
K
PRO 3ALA 208
M
LEU 5LEU 160
N
ASN 4THR 226
P
LEU 2ASP 42
Q
MET 1SER 38
R
GLU 19TYR 92
S
LEU 26VAL 102
T
VAL 2ALA 45
L
GLN 40PRO 106
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are230 helices in PDB entry 8KI3. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
A
4 7Right-handed 310
Helix 2
AA2
A
8 18Right-handed alpha
Helix 3
AA3
A
100 104Right-handed 310
Helix 4
AA4
A
150 157Right-handed alpha
Helix 5
AA5
A
174 186Right-handed alpha
Helix 6
AA6
A
186 192Right-handed alpha
Helix 7
AA7
A
209 223Right-handed alpha
Helix 8
AA8
A
239 259Right-handed alpha
Helix 9
AA9
A
270 285Right-handed alpha
Helix 10
AB1
A
290 294Right-handed 310
Helix 11
AB2
A
297 307Right-handed alpha
Helix 12
AB3
A
313 317Right-handed 310
Helix 13
AB4
A
336 346Right-handed alpha
Helix 14
AB5
A
356 360Right-handed 310
Helix 15
AB6
A
374 379Right-handed 310
Helix 16
AB7
A
380 400Right-handed alpha
Helix 17
AB8
A
406 410Right-handed 310
Helix 18
AB9
A
411 429Right-handed alpha
Helix 19
AC1
A
437 450Right-handed alpha
Helix 20
AC2
A
457 459Right-handed 310
Helix 21
AC3
A
460 476Right-handed alpha
Helix 22
AC4
A
476 487Right-handed alpha
Helix 23
AC5
A
490 508Right-handed alpha
Helix 24
AC6
B
78 82Right-handed 310
Helix 25
AC7
B
100 104Right-handed 310
Helix 26
AC8
B
150 157Right-handed alpha
Helix 27
AC9
B
174 186Right-handed alpha
Helix 28
AD1
B
186 192Right-handed alpha
Helix 29
AD2
B
194 198Right-handed 310
Helix 30
AD3
B
209 223Right-handed alpha
Helix 31
AD4
B
239 259Right-handed alpha
Helix 32
AD5
B
270 285Right-handed alpha
Helix 33
AD6
B
290 294Right-handed 310
Helix 34
AD7
B
297 307Right-handed alpha
Helix 35
AD8
B
313 317Right-handed 310
Helix 36
AD9
B
336 346Right-handed alpha
Helix 37
AE1
B
353 359Right-handed alpha
Helix 38
AE2
B
375 379Right-handed 310
Helix 39
AE3
B
380 401Right-handed alpha
Helix 40
AE4
B
413 429Right-handed alpha
Helix 41
AE5
B
437 450Right-handed alpha
Helix 42
AE6
B
457 459Right-handed 310
Helix 43
AE7
B
460 476Right-handed alpha
Helix 44
AE8
B
476 487Right-handed alpha
Helix 45
AE9
B
490 507Right-handed alpha
Helix 46
AF1
C
78 82Right-handed 310
Helix 47
AF2
C
150 157Right-handed alpha
Helix 48
AF3
C
174 186Right-handed alpha
Helix 49
AF4
C
186 191Right-handed alpha
Helix 50
AF5
C
194 197Right-handed 310
Helix 51
AF6
C
209 223Right-handed alpha
Helix 52
AF7
C
239 259Right-handed alpha
Helix 53
AF8
C
270 284Right-handed alpha
Helix 54
AF9
C
290 294Right-handed 310
Helix 55
AG1
C
297 307Right-handed alpha
Helix 56
AG2
C
313 317Right-handed 310
Helix 57
AG3
C
336 346Right-handed alpha
Helix 58
AG4
C
353 359Right-handed alpha
Helix 59
AG5
C
374 379Right-handed 310
Helix 60
AG6
C
380 400Right-handed alpha
Helix 61
AG7
C
418 429Right-handed alpha
Helix 62
AG8
C
437 450Right-handed alpha
Helix 63
AG9
C
457 459Right-handed 310
Helix 64
AH1
C
460 476Right-handed alpha
Helix 65
AH2
C
476 487Right-handed alpha
Helix 66
AH3
C
490 508Right-handed alpha
Helix 67
AH4
D
90 94Right-handed 310
Helix 68
AH5
D
140 146Right-handed alpha
Helix 69
AH6
D
164 180Right-handed alpha
Helix 70
AH7
D
192 206Right-handed alpha
Helix 71
AH8
D
228 249Right-handed alpha
Helix 72
AH9
D
261 276Right-handed alpha
Helix 73
AI1
D
280 284Right-handed 310
Helix 74
AI2
D
287 297Right-handed alpha
Helix 75
AI3
D
316 319Right-handed 310
Helix 76
AI4
D
322 329Right-handed alpha
Helix 77
AI5
D
330 332Right-handed 310
Helix 78
AI6
D
339 344Right-handed alpha
Helix 79
AI7
D
366 394Right-handed alpha
Helix 80
AI8
D
400 418Right-handed alpha
Helix 81
AI9
D
424 429Right-handed alpha
Helix 82
AJ1
D
436 450Right-handed alpha
Helix 83
AJ2
D
456 460Right-handed 310
Helix 84
AJ3
D
465 480Right-handed alpha
Helix 85
AJ4
E
90 94Right-handed 310
Helix 86
AJ5
E
125 129Right-handed 310
Helix 87
AJ6
E
140 147Right-handed alpha
Helix 88
AJ7
E
164 180Right-handed alpha
Helix 89
AJ8
E
192 205Right-handed alpha
Helix 90
AJ9
E
228 249Right-handed alpha
Helix 91
AK1
E
260 275Right-handed alpha
Helix 92
AK2
E
280 284Right-handed 310
Helix 93
AK3
E
287 297Right-handed alpha
Helix 94
AK4
E
315 319Right-handed 310
Helix 95
AK5
E
322 329Right-handed alpha
Helix 96
AK6
E
339 345Right-handed alpha
Helix 97
AK7
E
362 367Right-handed alpha
Helix 98
AK8
E
367 391Right-handed alpha
Helix 99
AK9
E
402 417Right-handed alpha
Helix 100
AL1
E
421 423Right-handed 310
Helix 101
AL2
E
424 429Right-handed alpha
Helix 102
AL3
E
436 450Right-handed alpha
Helix 103
AL4
E
456 460Right-handed 310
Helix 104
AL5
E
465 474Right-handed alpha
Helix 105
AL6
F
90 94Right-handed 310
Helix 106
AL7
F
125 129Right-handed 310
Helix 107
AL8
F
140 147Right-handed alpha
Helix 108
AL9
F
164 177Right-handed alpha
Helix 109
AM1
F
192 206Right-handed alpha
Helix 110
AM2
F
228 249Right-handed alpha
Helix 111
AM3
F
261 275Right-handed alpha
Helix 112
AM4
F
280 284Right-handed 310
Helix 113
AM5
F
287 297Right-handed alpha
Helix 114
AM6
F
316 319Right-handed 310
Helix 115
AM7
F
322 329Right-handed alpha
Helix 116
AM8
F
330 332Right-handed 310
Helix 117
AM9
F
339 344Right-handed alpha
Helix 118
AN1
F
362 367Right-handed alpha
Helix 119
AN2
F
367 394Right-handed alpha
Helix 120
AN3
F
400 418Right-handed alpha
Helix 121
AN4
F
421 425Right-handed 310
Helix 122
AN5
F
436 450Right-handed alpha
Helix 123
AN6
F
456 460Right-handed 310
Helix 124
AN7
F
465 477Right-handed alpha
Helix 125
AN8
G
3 37Right-handed alpha
Helix 126
AN9
G
38 48Right-handed alpha
Helix 127
AO1
G
49 55Right-handed alpha
Helix 128
AO2
G
80 99Right-handed alpha
Helix 129
AO3
G
109 117Right-handed alpha
Helix 130
AO4
G
137 148Right-handed alpha
Helix 131
AO5
G
180 185Right-handed alpha
Helix 132
AO6
G
201 271Right-handed alpha
Helix 133
AO7
J
13 19Right-handed alpha
Helix 134
AO8
J
20 42Right-handed alpha
Helix 135
AO9
O
12 28Right-handed alpha
Helix 136
AP1
O
31 47Right-handed alpha
Helix 137
AP2
O
48 56Right-handed alpha
Helix 138
AP3
O
61 76Right-handed alpha
Helix 139
AP4
O
79 93Right-handed alpha
Helix 140
AP5
O
97 113Right-handed alpha
Helix 141
AP6
O
127 140Right-handed alpha
Helix 142
AP7
O
156 159Right-handed 310
Helix 143
AP8
O
174 188Right-handed alpha
Helix 144
AP9
1
2 14Right-handed alpha
Helix 145
AQ1
1
17 37Right-handed alpha
Helix 146
AQ2
1
39 41Right-handed 310
Helix 147
AQ3
1
42 69Right-handed alpha
Helix 148
AQ4
2
2 15Right-handed alpha
Helix 149
AQ5
2
18 30Right-handed alpha
Helix 150
AQ6
2
30 39Right-handed alpha
Helix 151
AQ7
2
42 73Right-handed alpha
Helix 152
AQ8
3
2 15Right-handed alpha
Helix 153
AQ9
3
17 37Right-handed alpha
Helix 154
AR1
3
39 41Right-handed 310
Helix 155
AR2
3
42 73Right-handed alpha
Helix 156
AR3
4
2 13Right-handed alpha
Helix 157
AR4
4
19 39Right-handed alpha
Helix 158
AR5
4
42 73Right-handed alpha
Helix 159
AR6
5
2 15Right-handed alpha
Helix 160
AR7
5
17 23Right-handed alpha
Helix 161
AR8
5
24 39Right-handed alpha
Helix 162
AR9
5
42 72Right-handed alpha
Helix 163
AS1
6
2 15Right-handed alpha
Helix 164
AS2
6
16 18Right-handed 310
Helix 165
AS3
6
19 24Right-handed alpha
Helix 166
AS4
6
30 39Right-handed alpha
Helix 167
AS5
6
42 51Right-handed alpha
Helix 168
AS6
6
51 72Right-handed alpha
Helix 169
AS7
7
3 15Right-handed alpha
Helix 170
AS8
7
17 25Right-handed alpha
Helix 171
AS9
7
27 37Right-handed alpha
Helix 172
AT1
7
39 41Right-handed 310
Helix 173
AT2
7
42 48Right-handed alpha
Helix 174
AT3
7
53 72Right-handed alpha
Helix 175
AT4
8
2 15Right-handed alpha
Helix 176
AT5
8
16 21Right-handed 310
Helix 177
AT6
8
23 39Right-handed alpha
Helix 178
AT7
8
42 51Right-handed alpha
Helix 179
AT8
8
51 72Right-handed alpha
Helix 180
AT9
H
101 103Right-handed 310
Helix 181
AU1
H
104 121Right-handed alpha
Helix 182
AU2
H
124 146Right-handed alpha
Helix 183
AU3
I
3 8Right-handed alpha
Helix 184
AU4
I
11 26Right-handed alpha
Helix 185
AU5
I
28 38Right-handed alpha
Helix 186
AU6
K
19 30Right-handed alpha
Helix 187
AU7
K
32 46Right-handed alpha
Helix 188
AU8
K
54 120Right-handed alpha
Helix 189
AU9
K
122 152Right-handed alpha
Helix 190
AV1
K
152 182Right-handed alpha
Helix 191
AV2
K
194 206Right-handed alpha
Helix 192
AV3
M
11 18Right-handed alpha
Helix 193
AV4
M
20 22Right-handed 310
Helix 194
AV5
M
23 43Right-handed alpha
Helix 195
AV6
M
53 60Right-handed alpha
Helix 196
AV7
M
64 75Right-handed alpha
Helix 197
AV8
M
85 123Right-handed alpha
Helix 198
AV9
M
126 130Right-handed 310
Helix 199
AW1
M
131 139Right-handed alpha
Helix 200
AW2
N
6 10Right-handed 310
Helix 201
AW3
N
20 25Right-handed alpha
Helix 202
AW4
N
26 31Right-handed 310
Helix 203
AW5
N
40 58Right-handed alpha
Helix 204
AW6
N
64 69Right-handed 310
Helix 205
AW7
N
75 85Right-handed alpha
Helix 206
AW8
N
93 96Right-handed 310
Helix 207
AW9
N
97 118Right-handed alpha
Helix 208
AX1
N
120 125Right-handed alpha
Helix 209
AX2
N
137 148Right-handed alpha
Helix 210
AX3
N
151 181Right-handed alpha
Helix 211
AX4
N
182 184Right-handed 310
Helix 212
AX5
N
185 224Right-handed alpha
Helix 213
AX6
P
13 19Right-handed alpha
Helix 214
AX7
P
21 41Right-handed alpha
Helix 215
AX8
Q
1 8Right-handed 310
Helix 216
AX9
Q
9 21Right-handed alpha
Helix 217
AY1
Q
22 29Right-handed alpha
Helix 218
AY2
R
26 32Right-handed alpha
Helix 219
AY3
R
37 55Right-handed alpha
Helix 220
AY4
R
61 65Right-handed 310
Helix 221
AY5
R
69 79Right-handed alpha
Helix 222
AY6
R
80 85Right-handed alpha
Helix 223
AY7
R
86 88Right-handed 310
Helix 224
AY8
S
27 37Right-handed alpha
Helix 225
AY9
S
43 61Right-handed alpha
Helix 226
AZ1
S
62 67Right-handed 310
Helix 227
AZ2
S
68 93Right-handed alpha
Helix 228
AZ3
T
8 44Right-handed alpha
Helix 229
AZ4
L
41 54Right-handed alpha
Helix 230
AZ5
L
67 83Right-handed alpha
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There are 24 sheets in PDB entry 8KI3. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6,

There are 14 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
60 66first strand
Strand 2
A
51 54anti-parallel
Strand 3
A
87 94anti-parallel
Strand 4
A
29 35anti-parallel
Strand 5
A
38 43anti-parallel
Strand 6
A
71 75anti-parallel
Strand 7
A
60 66anti-parallel
Strand 8
E
13 20anti-parallel
Strand 9
E
77 80anti-parallel
Strand 10
E
38 41anti-parallel
Strand 11
E
49 57anti-parallel
Strand 12
E
60 65anti-parallel
Strand 13
E
23 28anti-parallel
Strand 14
E
13 20anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
96 99first strand
Strand 2
A
125 128anti-parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
107 108first strand
Strand 2
A
229 234parallel
Strand 3
A
199 206parallel
Strand 4
A
263 269parallel
Strand 5
A
320 328parallel
Strand 6
A
166 169parallel
Strand 7
A
349 351parallel
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There are 14 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
60 66first strand
Strand 2
B
51 54anti-parallel
Strand 3
B
87 94anti-parallel
Strand 4
B
28 33anti-parallel
Strand 5
B
38 43anti-parallel
Strand 6
B
71 75anti-parallel
Strand 7
B
60 66anti-parallel
Strand 8
F
13 20anti-parallel
Strand 9
F
77 80anti-parallel
Strand 10
F
38 41anti-parallel
Strand 11
F
49 57anti-parallel
Strand 12
F
60 65anti-parallel
Strand 13
F
23 28anti-parallel
Strand 14
F
13 20anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
96 99first strand
Strand 2
B
125 128anti-parallel
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There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
107 108first strand
Strand 2
B
230 234parallel
Strand 3
B
200 206parallel
Strand 4
B
263 269parallel
Strand 5
B
320 328parallel
Strand 6
B
166 169parallel
Strand 7
B
348 352parallel
Strand 8
B
371 372anti-parallel
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There are 11 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
O
147 154first strand
Strand 2
O
115 122parallel
Strand 3
O
163 166anti-parallel
Strand 4
O
169 172anti-parallel
Strand 5
C
26 35anti-parallel
Strand 6
C
87 94anti-parallel
Strand 7
C
51 55anti-parallel
Strand 8
C
60 66anti-parallel
Strand 9
C
71 75anti-parallel
Strand 10
C
38 43anti-parallel
Strand 11
C
26 35anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
96 99first strand
Strand 2
C
125 128anti-parallel
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There are 8 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
107 108first strand
Strand 2
C
230 234parallel
Strand 3
C
199 206parallel
Strand 4
C
263 269parallel
Strand 5
C
320 328parallel
Strand 6
C
166 169parallel
Strand 7
C
348 351parallel
Strand 8
C
371 372anti-parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
145 146first strand
Strand 2
C
159 160anti-parallel
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There are 7 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
13 20first strand
Strand 2
D
23 28anti-parallel
Strand 3
D
60 65anti-parallel
Strand 4
D
49 57anti-parallel
Strand 5
D
38 41anti-parallel
Strand 6
D
77 80anti-parallel
Strand 7
D
13 20anti-parallel
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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
86 89first strand
Strand 2
D
115 118anti-parallel
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There are 7 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
97 98first strand
Strand 2
D
218 223parallel
Strand 3
D
184 189parallel
Strand 4
D
253 259parallel
Strand 5
D
306 314parallel
Strand 6
D
157 159parallel
Strand 7
D
336 338parallel
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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
135 136first strand
Strand 2
D
149 150anti-parallel
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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
86 89first strand
Strand 2
E
115 118anti-parallel
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There are 7 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
97 98first strand
Strand 2
E
218 224parallel
Strand 3
E
184 191parallel
Strand 4
E
253 258parallel
Strand 5
E
306 312parallel
Strand 6
E
154 158parallel
Strand 7
E
332 337parallel
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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
135 136first strand
Strand 2
E
149 150anti-parallel
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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
86 89first strand
Strand 2
F
115 118anti-parallel
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There are 8 strands in AC1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
97 98first strand
Strand 2
F
218 223parallel
Strand 3
F
183 189parallel
Strand 4
F
253 259parallel
Strand 5
F
306 314parallel
Strand 6
F
154 159parallel
Strand 7
F
334 337parallel
Strand 8
F
357 358anti-parallel
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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
135 136first strand
Strand 2
F
149 150anti-parallel
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There are 6 strands in AC3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
171 178first strand
Strand 2
G
158 165anti-parallel
Strand 3
G
66 71parallel
Strand 4
G
103 108parallel
Strand 5
G
124 129parallel
Strand 6
I
44 45anti-parallel
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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
26 31first strand
Strand 2
H
18 21anti-parallel
Strand 3
H
92 94parallel
Strand 4
H
80 82anti-parallel
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There are 5 strands in AC5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
45 47first strand
Strand 2
H
35 38anti-parallel
Strand 3
H
61 66anti-parallel
Strand 4
H
74 77anti-parallel
Strand 5
H
98 99anti-parallel
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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
K
12 13first strand
Strand 2
K
17 18anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il