Analysis of interatomic Contacts of Structural Units in PDB entry:
8KI7


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8KI7 entry

There are 4 chains in PDB entry 8KI7 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1SER 2090
E
 A 1 A 10
B
 G 4 G 12
F
 A 1 U 13
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 90 helices in PDB entry 8KI7. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
2 12Right-handed alpha
Helix 2
AA2
A
12 38Right-handed alpha
Helix 3
AA3
A
42 69Right-handed alpha
Helix 4
AA4
A
80 111Right-handed alpha
Helix 5
AA5
A
125 140Right-handed alpha
Helix 6
AA6
A
147 158Right-handed alpha
Helix 7
AA7
A
192 210Right-handed alpha
Helix 8
AA8
A
220 224Right-handed alpha
Helix 9
AA9
A
251 258Right-handed 310
Helix 10
AB1
A
259 268Right-handed alpha
Helix 11
AB2
A
277 281Right-handed 310
Helix 12
AB3
A
285 307Right-handed alpha
Helix 13
AB4
A
338 347Right-handed alpha
Helix 14
AB5
A
352 363Right-handed alpha
Helix 15
AB6
A
367 371Right-handed 310
Helix 16
AB7
A
374 390Right-handed alpha
Helix 17
AB8
A
397 413Right-handed alpha
Helix 18
AB9
A
415 432Right-handed alpha
Helix 19
AC1
A
439 455Right-handed alpha
Helix 20
AC2
A
462 466Right-handed 310
Helix 21
AC3
A
491 502Right-handed alpha
Helix 22
AC4
A
521 536Right-handed alpha
Helix 23
AC5
A
567 571Right-handed 310
Helix 24
AC6
A
591 606Right-handed alpha
Helix 25
AC7
A
610 626Right-handed alpha
Helix 26
AC8
A
663 682Right-handed alpha
Helix 27
AC9
A
690 700Right-handed alpha
Helix 28
AD1
A
701 706Right-handed 310
Helix 29
AD2
A
713 729Right-handed alpha
Helix 30
AD3
A
730 748Right-handed alpha
Helix 31
AD4
A
796 804Right-handed alpha
Helix 32
AD5
A
828 837Right-handed alpha
Helix 33
AD6
A
837 853Right-handed alpha
Helix 34
AD7
A
853 863Right-handed alpha
Helix 35
AD8
A
874 893Right-handed alpha
Helix 36
AD9
A
896 908Right-handed alpha
Helix 37
AE1
A
921 927Right-handed alpha
Helix 38
AE2
A
937 953Right-handed alpha
Helix 39
AE3
A
991 1005Right-handed alpha
Helix 40
AE4
A
1012 1036Right-handed alpha
Helix 41
AE5
A
1060 1075Right-handed alpha
Helix 42
AE6
A
1077 1089Right-handed alpha
Helix 43
AE7
A
1094 1097Right-handed 310
Helix 44
AE8
A
1098 1103Right-handed alpha
Helix 45
AE9
A
1114 1124Right-handed alpha
Helix 46
AF1
A
1126 1130Right-handed 310
Helix 47
AF2
A
1135 1151Right-handed alpha
Helix 48
AF3
A
1151 1163Right-handed alpha
Helix 49
AF4
A
1165 1178Right-handed alpha
Helix 50
AF5
A
1188 1195Right-handed alpha
Helix 51
AF6
A
1197 1209Right-handed alpha
Helix 52
AF7
A
1222 1235Right-handed alpha
Helix 53
AF8
A
1241 1247Right-handed alpha
Helix 54
AF9
A
1258 1271Right-handed alpha
Helix 55
AG1
A
1300 1313Right-handed alpha
Helix 56
AG2
A
1314 1320Right-handed alpha
Helix 57
AG3
A
1331 1353Right-handed alpha
Helix 58
AG4
A
1377 1385Right-handed alpha
Helix 59
AG5
A
1394 1408Right-handed alpha
Helix 60
AG6
A
1414 1428Right-handed alpha
Helix 61
AG7
A
1434 1439Right-handed alpha
Helix 62
AG8
A
1460 1478Right-handed alpha
Helix 63
AG9
A
1505 1513Right-handed alpha
Helix 64
AH1
A
1517 1532Right-handed alpha
Helix 65
AH2
A
1565 1572Right-handed alpha
Helix 66
AH3
A
1580 1598Right-handed alpha
Helix 67
AH4
A
1604 1620Right-handed alpha
Helix 68
AH5
A
1630 1638Right-handed alpha
Helix 69
AH6
A
1647 1651Right-handed 310
Helix 70
AH7
A
1657 1664Right-handed alpha
Helix 71
AH8
A
1667 1682Right-handed alpha
Helix 72
AH9
A
1686 1696Right-handed alpha
Helix 73
AI1
A
1699 1714Right-handed alpha
Helix 74
AI2
A
1717 1732Right-handed alpha
Helix 75
AI3
A
1763 1770Right-handed alpha
Helix 76
AI4
A
1770 1780Right-handed alpha
Helix 77
AI5
A
1814 1829Right-handed alpha
Helix 78
AI6
A
1830 1835Right-handed alpha
Helix 79
AI7
A
1843 1850Right-handed alpha
Helix 80
AI8
A
1867 1877Right-handed alpha
Helix 81
AI9
A
1891 1904Right-handed alpha
Helix 82
AJ1
A
1910 1923Right-handed alpha
Helix 83
AJ2
A
1924 1936Right-handed alpha
Helix 84
AJ3
A
1951 1965Right-handed alpha
Helix 85
AJ4
A
1986 2008Right-handed alpha
Helix 86
AJ5
A
2018 2030Right-handed alpha
Helix 87
AJ6
A
2031 2043Right-handed alpha
Helix 88
AJ7
A
2052 2058Right-handed alpha
Helix 89
AJ8
A
2059 2066Right-handed alpha
Helix 90
AJ9
A
2067 2069Right-handed 310
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There are 9 sheets in PDB entry 8KI7. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
167 172first strand
Strand 2
A
179 186anti-parallel
Strand 3
A
226 233parallel
Strand 4
A
241 247anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
214 215first strand
Strand 2
A
218 219anti-parallel
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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
508 509first strand
Strand 2
A
808 814anti-parallel
Strand 3
A
817 822anti-parallel
Strand 4
A
786 790anti-parallel
Strand 5
A
768 772anti-parallel
Strand 6
A
756 760anti-parallel
Strand 7
A
584 586anti-parallel
Strand 8
A
579 580anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1109 1110first strand
Strand 2
A
1218 1219anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1295 1299first strand
Strand 2
A
1280 1285anti-parallel
Strand 3
A
1410 1412parallel
Strand 4
A
1446 1448anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1484 1486first strand
Strand 2
A
1495 1503anti-parallel
Strand 3
A
1489 1492anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1484 1486first strand
Strand 2
A
1495 1503anti-parallel
Strand 3
A
1359 1367anti-parallel
Strand 4
A
1543 1545anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1548 1549first strand
Strand 2
A
1556 1557anti-parallel
Strand 3
A
1560 1561anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1974 1975first strand
Strand 2
A
2082 2084anti-parallel
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