Analysis of interatomic Contacts of Structural Units in PDB entry:
8KI9


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8KI9 entry

There is 1 chain in PDB entry 8KI9 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 316LEU 2704
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are105 helices in PDB entry 8KI9. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
338 347Right-handed alpha
Helix 2
AA2
A
352 361Right-handed alpha
Helix 3
AA3
A
362 367Right-handed 310
Helix 4
AA4
A
372 390Right-handed alpha
Helix 5
AA5
A
398 413Right-handed alpha
Helix 6
AA6
A
415 432Right-handed alpha
Helix 7
AA7
A
439 455Right-handed alpha
Helix 8
AA8
A
483 493Right-handed alpha
Helix 9
AA9
A
509 523Right-handed alpha
Helix 10
AB1
A
540 554Right-handed alpha
Helix 11
AB2
A
568 585Right-handed alpha
Helix 12
AB3
A
592 603Right-handed alpha
Helix 13
AB4
A
604 609Right-handed 310
Helix 14
AB5
A
618 632Right-handed alpha
Helix 15
AB6
A
633 652Right-handed alpha
Helix 16
AB7
A
692 699Right-handed alpha
Helix 17
AB8
A
723 732Right-handed alpha
Helix 18
AB9
A
732 748Right-handed alpha
Helix 19
AC1
A
748 758Right-handed alpha
Helix 20
AC2
A
759 763Right-handed 310
Helix 21
AC3
A
769 788Right-handed alpha
Helix 22
AC4
A
791 804Right-handed alpha
Helix 23
AC5
A
816 821Right-handed alpha
Helix 24
AC6
A
832 847Right-handed alpha
Helix 25
AC7
A
871 885Right-handed alpha
Helix 26
AC8
A
892 916Right-handed alpha
Helix 27
AC9
A
940 955Right-handed alpha
Helix 28
AD1
A
957 969Right-handed alpha
Helix 29
AD2
A
974 982Right-handed 310
Helix 30
AD3
A
994 1004Right-handed alpha
Helix 31
AD4
A
1006 1010Right-handed 310
Helix 32
AD5
A
1015 1031Right-handed alpha
Helix 33
AD6
A
1031 1043Right-handed alpha
Helix 34
AD7
A
1045 1058Right-handed alpha
Helix 35
AD8
A
1070 1075Right-handed alpha
Helix 36
AD9
A
1077 1087Right-handed alpha
Helix 37
AE1
A
1102 1115Right-handed alpha
Helix 38
AE2
A
1122 1127Right-handed alpha
Helix 39
AE3
A
1130 1134Right-handed 310
Helix 40
AE4
A
1138 1151Right-handed alpha
Helix 41
AE5
A
1167 1187Right-handed alpha
Helix 42
AE6
A
1198 1219Right-handed alpha
Helix 43
AE7
A
1237 1242Right-handed alpha
Helix 44
AE8
A
1244 1252Right-handed alpha
Helix 45
AE9
A
1261 1274Right-handed alpha
Helix 46
AF1
A
1281 1295Right-handed alpha
Helix 47
AF2
A
1300 1305Right-handed alpha
Helix 48
AF3
A
1327 1345Right-handed alpha
Helix 49
AF4
A
1372 1380Right-handed alpha
Helix 50
AF5
A
1384 1400Right-handed alpha
Helix 51
AF6
A
1432 1439Right-handed alpha
Helix 52
AF7
A
1447 1465Right-handed alpha
Helix 53
AF8
A
1470 1487Right-handed alpha
Helix 54
AF9
A
1497 1505Right-handed alpha
Helix 55
AG1
A
1509 1513Right-handed 310
Helix 56
AG2
A
1514 1518Right-handed 310
Helix 57
AG3
A
1524 1531Right-handed alpha
Helix 58
AG4
A
1535 1549Right-handed alpha
Helix 59
AG5
A
1553 1563Right-handed alpha
Helix 60
AG6
A
1565 1581Right-handed alpha
Helix 61
AG7
A
1584 1599Right-handed alpha
Helix 62
AG8
A
1613 1620Right-handed 310
Helix 63
AG9
A
1621 1628Right-handed alpha
Helix 64
AH1
A
1639 1654Right-handed alpha
Helix 65
AH2
A
1655 1660Right-handed alpha
Helix 66
AH3
A
1668 1674Right-handed alpha
Helix 67
AH4
A
1681 1689Right-handed alpha
Helix 68
AH5
A
1699 1707Right-handed alpha
Helix 69
AH6
A
1817 1828Right-handed alpha
Helix 70
AH7
A
1830 1841Right-handed alpha
Helix 71
AH8
A
1856 1868Right-handed alpha
Helix 72
AH9
A
1891 1913Right-handed alpha
Helix 73
AI1
A
1923 1934Right-handed alpha
Helix 74
AI2
A
1936 1945Right-handed alpha
Helix 75
AI3
A
1957 1963Right-handed alpha
Helix 76
AI4
A
1965 1971Right-handed alpha
Helix 77
AI5
A
1997 2028Right-handed alpha
Helix 78
AI6
A
2032 2043Right-handed alpha
Helix 79
AI7
A
2050 2067Right-handed alpha
Helix 80
AI8
A
2071 2076Right-handed alpha
Helix 81
AI9
A
2078 2085Right-handed alpha
Helix 82
AJ1
A
2088 2095Right-handed alpha
Helix 83
AJ2
A
2099 2110Right-handed alpha
Helix 84
AJ3
A
2153 2171Right-handed alpha
Helix 85
AJ4
A
2171 2176Right-handed alpha
Helix 86
AJ5
A
2239 2247Right-handed alpha
Helix 87
AJ6
A
2251 2264Right-handed alpha
Helix 88
AJ7
A
2268 2290Right-handed alpha
Helix 89
AJ8
A
2297 2308Right-handed alpha
Helix 90
AJ9
A
2311 2322Right-handed alpha
Helix 91
AK1
A
2329 2362Right-handed alpha
Helix 92
AK2
A
2393 2408Right-handed alpha
Helix 93
AK3
A
2414 2421Right-handed 310
Helix 94
AK4
A
2442 2448Right-handed 310
Helix 95
AK5
A
2462 2472Right-handed alpha
Helix 96
AK6
A
2497 2501Right-handed 310
Helix 97
AK7
A
2502 2512Right-handed alpha
Helix 98
AK8
A
2525 2541Right-handed alpha
Helix 99
AK9
A
2546 2559Right-handed alpha
Helix 100
AL1
A
2569 2590Right-handed alpha
Helix 101
AL2
A
2594 2609Right-handed alpha
Helix 102
AL3
A
2618 2631Right-handed alpha
Helix 103
AL4
A
2634 2652Right-handed alpha
Helix 104
AL5
A
2666 2689Right-handed alpha
Helix 105
AL6
A
2698 2704Right-handed alpha
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There are 12 sheets in PDB entry 8KI9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
498 499first strand
Strand 2
A
703 709anti-parallel
Strand 3
A
712 717anti-parallel
Strand 4
A
680 687anti-parallel
Strand 5
A
671 673anti-parallel
Strand 6
A
659 663anti-parallel
Strand 7
A
533 535anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
498 499first strand
Strand 2
A
703 709anti-parallel
Strand 3
A
712 717anti-parallel
Strand 4
A
680 687anti-parallel
Strand 5
A
720 721anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
989 990first strand
Strand 2
A
1098 1099anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1226 1231first strand
Strand 2
A
1362 1370anti-parallel
Strand 3
A
1356 1359anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1278 1279first strand
Strand 2
A
1313 1314anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1423 1424first strand
Strand 2
A
1427 1428anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1878 1879first strand
Strand 2
A
1989 1990anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2044 2045first strand
Strand 2
A
2048 2049anti-parallel
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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2118 2120first strand
Strand 2
A
2125 2130anti-parallel
Strand 3
A
2135 2140anti-parallel
Strand 4
A
2210 2224parallel
Strand 5
A
2180 2184anti-parallel
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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2118 2120first strand
Strand 2
A
2125 2130anti-parallel
Strand 3
A
2135 2140anti-parallel
Strand 4
A
2210 2224parallel
Strand 5
A
2188 2193anti-parallel
Strand 6
A
2199 2204anti-parallel
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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2390 2391first strand
Strand 2
A
2386 2387anti-parallel
Strand 3
A
2433 2434parallel
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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2454 2455first strand
Strand 2
A
2515 2518anti-parallel
Strand 3
A
2474 2477anti-parallel
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