Analysis of interatomic Contacts of Structural Units in PDB entry:
8KIA


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8KIA entry

There is 1 chain in PDB entry 8KIA (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 316SER 2090
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 75 helices in PDB entry 8KIA. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
337 347Right-handed alpha
Helix 2
AA2
A
352 363Right-handed alpha
Helix 3
AA3
A
364 367Right-handed 310
Helix 4
AA4
A
372 390Right-handed alpha
Helix 5
AA5
A
397 413Right-handed alpha
Helix 6
AA6
A
414 432Right-handed alpha
Helix 7
AA7
A
439 455Right-handed alpha
Helix 8
AA8
A
462 466Right-handed 310
Helix 9
AA9
A
491 502Right-handed alpha
Helix 10
AB1
A
521 536Right-handed alpha
Helix 11
AB2
A
591 605Right-handed alpha
Helix 12
AB3
A
663 682Right-handed alpha
Helix 13
AB4
A
690 700Right-handed alpha
Helix 14
AB5
A
701 706Right-handed 310
Helix 15
AB6
A
715 729Right-handed alpha
Helix 16
AB7
A
730 749Right-handed alpha
Helix 17
AB8
A
797 804Right-handed alpha
Helix 18
AB9
A
828 837Right-handed alpha
Helix 19
AC1
A
837 853Right-handed alpha
Helix 20
AC2
A
853 863Right-handed alpha
Helix 21
AC3
A
874 893Right-handed alpha
Helix 22
AC4
A
896 908Right-handed alpha
Helix 23
AC5
A
921 927Right-handed alpha
Helix 24
AC6
A
937 953Right-handed alpha
Helix 25
AC7
A
991 1005Right-handed alpha
Helix 26
AC8
A
1012 1036Right-handed alpha
Helix 27
AC9
A
1062 1075Right-handed alpha
Helix 28
AD1
A
1077 1089Right-handed alpha
Helix 29
AD2
A
1094 1097Right-handed 310
Helix 30
AD3
A
1098 1103Right-handed alpha
Helix 31
AD4
A
1114 1124Right-handed alpha
Helix 32
AD5
A
1126 1130Right-handed 310
Helix 33
AD6
A
1135 1151Right-handed alpha
Helix 34
AD7
A
1151 1163Right-handed alpha
Helix 35
AD8
A
1165 1178Right-handed alpha
Helix 36
AD9
A
1190 1195Right-handed alpha
Helix 37
AE1
A
1197 1209Right-handed alpha
Helix 38
AE2
A
1223 1235Right-handed alpha
Helix 39
AE3
A
1258 1272Right-handed alpha
Helix 40
AE4
A
1300 1314Right-handed alpha
Helix 41
AE5
A
1331 1352Right-handed alpha
Helix 42
AE6
A
1377 1385Right-handed alpha
Helix 43
AE7
A
1393 1408Right-handed alpha
Helix 44
AE8
A
1414 1428Right-handed alpha
Helix 45
AE9
A
1439 1443Right-handed 310
Helix 46
AF1
A
1458 1478Right-handed alpha
Helix 47
AF2
A
1505 1513Right-handed alpha
Helix 48
AF3
A
1517 1533Right-handed alpha
Helix 49
AF4
A
1565 1575Right-handed alpha
Helix 50
AF5
A
1580 1598Right-handed alpha
Helix 51
AF6
A
1603 1620Right-handed alpha
Helix 52
AF7
A
1630 1638Right-handed alpha
Helix 53
AF8
A
1642 1646Right-handed 310
Helix 54
AF9
A
1647 1651Right-handed 310
Helix 55
AG1
A
1657 1664Right-handed alpha
Helix 56
AG2
A
1667 1682Right-handed alpha
Helix 57
AG3
A
1686 1695Right-handed alpha
Helix 58
AG4
A
1699 1714Right-handed alpha
Helix 59
AG5
A
1717 1733Right-handed alpha
Helix 60
AG6
A
1762 1769Right-handed 310
Helix 61
AG7
A
1770 1780Right-handed alpha
Helix 62
AG8
A
1781 1785Right-handed 310
Helix 63
AG9
A
1814 1829Right-handed alpha
Helix 64
AH1
A
1830 1835Right-handed alpha
Helix 65
AH2
A
1843 1850Right-handed alpha
Helix 66
AH3
A
1870 1876Right-handed alpha
Helix 67
AH4
A
1891 1905Right-handed alpha
Helix 68
AH5
A
1910 1924Right-handed alpha
Helix 69
AH6
A
1924 1936Right-handed alpha
Helix 70
AH7
A
1954 1965Right-handed alpha
Helix 71
AH8
A
1986 2008Right-handed alpha
Helix 72
AH9
A
2018 2030Right-handed alpha
Helix 73
AI1
A
2031 2043Right-handed alpha
Helix 74
AI2
A
2052 2058Right-handed alpha
Helix 75
AI3
A
2065 2069Right-handed 310
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There are 7 sheets in PDB entry 8KIA. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
508 509first strand
Strand 2
A
808 814anti-parallel
Strand 3
A
817 822anti-parallel
Strand 4
A
785 793anti-parallel
Strand 5
A
768 771anti-parallel
Strand 6
A
756 760anti-parallel
Strand 7
A
584 586anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
508 509first strand
Strand 2
A
808 814anti-parallel
Strand 3
A
817 822anti-parallel
Strand 4
A
785 793anti-parallel
Strand 5
A
825 826anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1109 1110first strand
Strand 2
A
1218 1219anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1298 1299first strand
Strand 2
A
1280 1282anti-parallel
Strand 3
A
1410 1412parallel
Strand 4
A
1446 1447anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1489 1492first strand
Strand 2
A
1495 1503anti-parallel
Strand 3
A
1359 1368anti-parallel
Strand 4
A
1537 1545anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1548 1549first strand
Strand 2
A
1556 1557anti-parallel
Strand 3
A
1560 1561anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1973 1975first strand
Strand 2
A
2082 2085anti-parallel
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