Analysis of interatomic Contacts of Structural Units in PDB entry:
8KIE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8KIE entry

There are 7 chains in PDB entry 8KIE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
y
 MET 1VAL 363
a
 A 730 U 865
a
 U 875 C 2672
a
 G 2674 C 2700
a
 G 2702 G 2998
j
 MET 1LEU 123
o
 SER 2ASN 115
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 8KIE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
y
14 25Right-handed alpha
Helix 2
AA2
y
48 59Right-handed alpha
Helix 3
AA3
y
79 83Right-handed 310
Helix 4
AA4
y
84 96Right-handed alpha
Helix 5
AA5
y
120 152Right-handed alpha
Helix 6
AA6
y
155 174Right-handed alpha
Helix 7
AA7
y
177 181Right-handed 310
Helix 8
AA8
y
184 191Right-handed alpha
Helix 9
AA9
y
216 229Right-handed alpha
Helix 10
AB1
y
237 247Right-handed alpha
Helix 11
AB2
y
248 259Right-handed alpha
Helix 12
AB3
y
264 277Right-handed alpha
Helix 13
AB4
y
300 309Right-handed alpha
Helix 14
AB5
y
309 315Right-handed alpha
Helix 15
AB6
y
323 330Right-handed alpha
Helix 16
AB7
y
332 340Right-handed alpha
Helix 17
AB8
j
106 108Right-handed 310
Helix 18
AB9
j
112 119Right-handed alpha
Helix 19
AC1
o
3 11Right-handed alpha
Helix 20
AC2
o
53 56Right-handed 310
Helix 21
AC3
o
97 103Right-handed 310
Helix 22
AC4
o
104 109Right-handed 310
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There are 6 sheets in PDB entry 8KIE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
y
41 45first strand
Strand 2
y
67 72anti-parallel
Strand 3
y
4 9parallel
Strand 4
y
99 105parallel
Strand 5
y
202 207parallel
Strand 6
y
232 236parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
y
62 64first strand
Strand 2
y
289 296parallel
Strand 3
y
279 284anti-parallel
Strand 4
y
356 357parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
y
342 345first strand
Strand 2
y
318 322anti-parallel
Strand 3
y
359 360anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
j
7 10first strand
Strand 2
j
16 24anti-parallel
Strand 3
j
38 46anti-parallel
Strand 4
j
57 64anti-parallel
Strand 5
j
83 87anti-parallel
Strand 6
j
7 10parallel
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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
j
69 70first strand
Strand 2
j
76 79anti-parallel
Strand 3
o
68 75anti-parallel
Strand 4
o
58 65anti-parallel
Strand 5
o
37 51anti-parallel
Strand 6
o
25 34anti-parallel
Strand 7
o
81 88anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
j
103 104first strand
Strand 2
j
122 123parallel
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