Analysis of interatomic Contacts of Structural Units in PDB entry:
8ODP

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8ODP entry

There are 4 chains in PDB entry 8ODP (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	GLY 505
B	PRO 10	ILE 179
C	SER 2	GLY 505
D	MET 13	PHE 118

There are110 helices in PDB entry 8ODP. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	4	9	Right-handed alpha
Helix 2	AA2	A	39	53	Right-handed alpha
Helix 3	AA3	A	64	74	Right-handed alpha
Helix 4	AA4	A	112	117	Right-handed alpha
Helix 5	AA5	A	133	137	Right-handed alpha
Helix 6	AA6	A	139	151	Right-handed alpha
Helix 7	AA7	A	164	175	Right-handed alpha
Helix 8	AA8	A	175	182	Right-handed alpha
Helix 9	AA9	A	186	192	Right-handed alpha
Helix 10	AB1	A	193	198	Right-handed 310
Helix 11	AB2	A	203	207	Right-handed 310
Helix 12	AB3	A	208	219	Right-handed alpha
Helix 13	AB4	A	239	247	Right-handed alpha
Helix 14	AB5	A	262	279	Right-handed alpha
Helix 15	AB6	A	290	294	Right-handed 310
Helix 16	AB7	A	300	336	Right-handed alpha
Helix 17	AB8	A	340	344	Right-handed 310
Helix 18	AB9	A	389	393	Right-handed 310
Helix 19	AC1	A	415	422	Right-handed alpha
Helix 20	AC2	A	435	443	Right-handed alpha
Helix 21	AC3	A	444	455	Right-handed alpha
Helix 22	AC4	A	463	475	Right-handed 310
Helix 23	AC5	A	477	488	Right-handed alpha
Helix 24	AC6	B	26	35	Right-handed alpha
Helix 25	AC7	B	60	77	Right-handed alpha
Helix 26	AC8	B	78	82	Right-handed 310
Helix 27	AC9	B	96	114	Right-handed alpha
Helix 28	AD1	C	4	9	Right-handed alpha
Helix 29	AD2	C	39	54	Right-handed alpha
Helix 30	AD3	C	55	59	Right-handed 310
Helix 31	AD4	C	64	74	Right-handed alpha
Helix 32	AD5	C	112	116	Right-handed 310
Helix 33	AD6	C	133	137	Right-handed alpha
Helix 34	AD7	C	139	151	Right-handed alpha
Helix 35	AD8	C	164	175	Right-handed alpha
Helix 36	AD9	C	175	182	Right-handed alpha
Helix 37	AE1	C	186	192	Right-handed alpha
Helix 38	AE2	C	193	198	Right-handed 310
Helix 39	AE3	C	203	207	Right-handed 310
Helix 40	AE4	C	208	219	Right-handed alpha
Helix 41	AE5	C	239	246	Right-handed alpha
Helix 42	AE6	C	262	285	Right-handed alpha
Helix 43	AE7	C	290	294	Right-handed 310
Helix 44	AE8	C	300	336	Right-handed alpha
Helix 45	AE9	C	340	344	Right-handed 310
Helix 46	AF1	C	389	393	Right-handed 310
Helix 47	AF2	C	415	422	Right-handed alpha
Helix 48	AF3	C	435	443	Right-handed alpha
Helix 49	AF4	C	444	455	Right-handed alpha
Helix 50	AF5	C	463	475	Right-handed 310
Helix 51	AF6	C	477	488	Right-handed alpha
Helix 52	AF7	D	26	35	Right-handed alpha
Helix 53	AF8	D	60	75	Right-handed alpha
Helix 54	AF9	D	78	82	Right-handed 310
Helix 55	AG1	D	96	114	Right-handed alpha
Helix 56	AG2	E	4	10	Right-handed alpha
Helix 57	AG3	E	39	53	Right-handed alpha
Helix 58	AG4	E	55	59	Right-handed 310
Helix 59	AG5	E	64	74	Right-handed alpha
Helix 60	AG6	E	112	117	Right-handed alpha
Helix 61	AG7	E	133	137	Right-handed alpha
Helix 62	AG8	E	139	151	Right-handed alpha
Helix 63	AG9	E	164	175	Right-handed alpha
Helix 64	AH1	E	175	182	Right-handed alpha
Helix 65	AH2	E	186	192	Right-handed alpha
Helix 66	AH3	E	193	198	Right-handed 310
Helix 67	AH4	E	203	207	Right-handed 310
Helix 68	AH5	E	208	219	Right-handed alpha
Helix 69	AH6	E	239	246	Right-handed alpha
Helix 70	AH7	E	262	285	Right-handed alpha
Helix 71	AH8	E	290	294	Right-handed 310
Helix 72	AH9	E	300	337	Right-handed alpha
Helix 73	AI1	E	340	344	Right-handed 310
Helix 74	AI2	E	389	393	Right-handed 310
Helix 75	AI3	E	415	422	Right-handed alpha
Helix 76	AI4	E	435	443	Right-handed alpha
Helix 77	AI5	E	444	455	Right-handed alpha
Helix 78	AI6	E	463	475	Right-handed 310
Helix 79	AI7	E	477	488	Right-handed alpha
Helix 80	AI8	F	26	35	Right-handed alpha
Helix 81	AI9	F	60	75	Right-handed alpha
Helix 82	AJ1	F	78	82	Right-handed 310
Helix 83	AJ2	F	96	114	Right-handed alpha
Helix 84	AJ3	G	4	10	Right-handed alpha
Helix 85	AJ4	G	39	53	Right-handed alpha
Helix 86	AJ5	G	64	73	Right-handed alpha
Helix 87	AJ6	G	112	117	Right-handed alpha
Helix 88	AJ7	G	133	137	Right-handed alpha
Helix 89	AJ8	G	139	151	Right-handed alpha
Helix 90	AJ9	G	164	175	Right-handed alpha
Helix 91	AK1	G	175	182	Right-handed alpha
Helix 92	AK2	G	186	192	Right-handed alpha
Helix 93	AK3	G	193	198	Right-handed 310
Helix 94	AK4	G	203	207	Right-handed 310
Helix 95	AK5	G	208	219	Right-handed alpha
Helix 96	AK6	G	239	246	Right-handed alpha
Helix 97	AK7	G	262	281	Right-handed alpha
Helix 98	AK8	G	290	294	Right-handed 310
Helix 99	AK9	G	300	336	Right-handed alpha
Helix 100	AL1	G	340	344	Right-handed 310
Helix 101	AL2	G	389	393	Right-handed 310
Helix 102	AL3	G	415	422	Right-handed alpha
Helix 103	AL4	G	435	441	Right-handed alpha
Helix 104	AL5	G	444	455	Right-handed alpha
Helix 105	AL6	G	463	475	Right-handed 310
Helix 106	AL7	G	477	488	Right-handed alpha
Helix 107	AL8	H	26	35	Right-handed alpha
Helix 108	AL9	H	60	75	Right-handed alpha
Helix 109	AM1	H	78	82	Right-handed 310
Helix 110	AM2	H	96	114	Right-handed alpha

There are 32 sheets in PDB entry 8ODP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	12	16	first strand
Strand 2	A	19	22	anti-parallel
Strand 3	A	33	37	anti-parallel
Strand 4	A	81	89	parallel
Strand 5	A	96	103	anti-parallel
Strand 6	A	366	375	anti-parallel
Strand 7	A	354	363	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	110	111	first strand
Strand 2	A	296	297	anti-parallel

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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	346	352	first strand
Strand 2	A	123	132	anti-parallel
Strand 3	A	253	260	anti-parallel
Strand 4	A	228	237	anti-parallel
Strand 5	A	491	504	anti-parallel
Strand 6	A	409	414	anti-parallel
Strand 7	A	398	401	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	346	352	first strand
Strand 2	A	123	132	anti-parallel
Strand 3	A	253	260	anti-parallel
Strand 4	A	228	237	anti-parallel
Strand 5	A	491	504	anti-parallel
Strand 6	A	458	461	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	378	379	first strand
Strand 2	A	425	426	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	43	46	first strand
Strand 2	B	52	57	anti-parallel
Strand 3	B	172	178	anti-parallel
Strand 4	B	157	158	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	43	46	first strand
Strand 2	B	52	57	anti-parallel
Strand 3	B	172	178	anti-parallel
Strand 4	B	164	166	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	86	93	first strand
Strand 2	B	134	143	anti-parallel
Strand 3	B	118	129	anti-parallel

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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	12	16	first strand
Strand 2	C	19	22	anti-parallel
Strand 3	C	33	36	anti-parallel
Strand 4	C	81	89	parallel
Strand 5	C	96	103	anti-parallel
Strand 6	C	366	375	anti-parallel
Strand 7	C	354	363	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	110	111	first strand
Strand 2	C	296	297	anti-parallel

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There are 7 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	346	352	first strand
Strand 2	C	123	132	anti-parallel
Strand 3	C	253	260	anti-parallel
Strand 4	C	228	237	anti-parallel
Strand 5	C	491	504	anti-parallel
Strand 6	C	409	414	anti-parallel
Strand 7	C	398	401	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	346	352	first strand
Strand 2	C	123	132	anti-parallel
Strand 3	C	253	260	anti-parallel
Strand 4	C	228	237	anti-parallel
Strand 5	C	491	504	anti-parallel
Strand 6	C	458	461	parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	378	379	first strand
Strand 2	C	425	426	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	43	46	first strand
Strand 2	D	52	57	anti-parallel
Strand 3	D	172	178	anti-parallel
Strand 4	D	157	158	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	43	46	first strand
Strand 2	D	52	57	anti-parallel
Strand 3	D	172	178	anti-parallel
Strand 4	D	164	166	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	86	93	first strand
Strand 2	D	134	143	anti-parallel
Strand 3	D	118	129	anti-parallel

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There are 7 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	12	16	first strand
Strand 2	E	19	22	anti-parallel
Strand 3	E	33	36	anti-parallel
Strand 4	E	78	89	parallel
Strand 5	E	96	103	anti-parallel
Strand 6	E	366	375	anti-parallel
Strand 7	E	354	363	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	110	111	first strand
Strand 2	E	296	297	anti-parallel

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There are 7 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	347	352	first strand
Strand 2	E	123	132	anti-parallel
Strand 3	E	253	260	anti-parallel
Strand 4	E	228	237	anti-parallel
Strand 5	E	491	504	anti-parallel
Strand 6	E	409	414	anti-parallel
Strand 7	E	398	401	anti-parallel

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There are 6 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	347	352	first strand
Strand 2	E	123	132	anti-parallel
Strand 3	E	253	260	anti-parallel
Strand 4	E	228	237	anti-parallel
Strand 5	E	491	504	anti-parallel
Strand 6	E	458	461	parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	377	379	first strand
Strand 2	E	425	427	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	43	46	first strand
Strand 2	F	52	57	anti-parallel
Strand 3	F	172	178	anti-parallel
Strand 4	F	157	158	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	43	46	first strand
Strand 2	F	52	57	anti-parallel
Strand 3	F	172	178	anti-parallel
Strand 4	F	164	166	anti-parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	86	93	first strand
Strand 2	F	134	143	anti-parallel
Strand 3	F	118	129	anti-parallel

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There are 7 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	12	16	first strand
Strand 2	G	19	22	anti-parallel
Strand 3	G	33	37	anti-parallel
Strand 4	G	78	89	parallel
Strand 5	G	96	103	anti-parallel
Strand 6	G	366	375	anti-parallel
Strand 7	G	354	363	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	110	111	first strand
Strand 2	G	296	297	anti-parallel

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There are 7 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	346	352	first strand
Strand 2	G	123	132	anti-parallel
Strand 3	G	253	260	anti-parallel
Strand 4	G	228	237	anti-parallel
Strand 5	G	491	504	anti-parallel
Strand 6	G	409	414	anti-parallel
Strand 7	G	398	401	anti-parallel

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There are 6 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	346	352	first strand
Strand 2	G	123	132	anti-parallel
Strand 3	G	253	260	anti-parallel
Strand 4	G	228	237	anti-parallel
Strand 5	G	491	504	anti-parallel
Strand 6	G	458	461	parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	377	379	first strand
Strand 2	G	425	427	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	43	46	first strand
Strand 2	H	52	57	anti-parallel
Strand 3	H	172	178	anti-parallel
Strand 4	H	157	158	anti-parallel

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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	43	46	first strand
Strand 2	H	52	57	anti-parallel
Strand 3	H	172	178	anti-parallel
Strand 4	H	164	166	anti-parallel

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There are 3 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	86	93	first strand
Strand 2	H	134	143	anti-parallel
Strand 3	H	118	129	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8ODP

Analysis of interatomic Contacts of Structural Units in PDB entry:
8ODP