Analysis of interatomic Contacts of Structural Units in PDB entry:
8ODU


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8ODU entry

There are 4 chains in PDB entry 8ODU (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 14GLU 339
B
 MET 14GLU 339
C
 VAL 300ARG 1181
D
 VAL 300ARG 1181
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 44 helices in PDB entry 8ODU. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
18 24Right-handed alpha
Helix 2
AA2
A
39 53Right-handed alpha
Helix 3
AA3
A
67 74Right-handed alpha
Helix 4
AA4
A
98 105Right-handed alpha
Helix 5
AA5
A
121 129Right-handed alpha
Helix 6
AA6
A
132 146Right-handed alpha
Helix 7
AA7
A
159 164Right-handed alpha
Helix 8
AA8
A
165 167Right-handed 310
Helix 9
AA9
A
168 181Right-handed alpha
Helix 10
AB1
A
206 229Right-handed alpha
Helix 11
AB2
A
243 259Right-handed alpha
Helix 12
AB3
A
281 303Right-handed alpha
Helix 13
AB4
A
320 330Right-handed alpha
Helix 14
AB5
B
18 23Right-handed alpha
Helix 15
AB6
B
39 53Right-handed alpha
Helix 16
AB7
B
67 74Right-handed alpha
Helix 17
AB8
B
97 104Right-handed alpha
Helix 18
AB9
B
121 125Right-handed alpha
Helix 19
AC1
B
132 146Right-handed alpha
Helix 20
AC2
B
159 164Right-handed alpha
Helix 21
AC3
B
165 167Right-handed 310
Helix 22
AC4
B
168 181Right-handed alpha
Helix 23
AC5
B
207 227Right-handed alpha
Helix 24
AC6
B
243 259Right-handed alpha
Helix 25
AC7
B
281 300Right-handed alpha
Helix 26
AC8
B
320 330Right-handed alpha
Helix 27
AC9
C
303 310Right-handed alpha
Helix 28
AD1
C
322 331Right-handed alpha
Helix 29
AD2
C
332 356Right-handed alpha
Helix 30
AD3
C
1002 1019Right-handed alpha
Helix 31
AD4
C
1023 1034Right-handed alpha
Helix 32
AD5
C
1039 1065Right-handed alpha
Helix 33
AD6
C
1070 1124Right-handed alpha
Helix 34
AD7
C
1139 1148Right-handed alpha
Helix 35
AD8
C
1164 1181Right-handed alpha
Helix 36
AD9
D
303 309Right-handed alpha
Helix 37
AE1
D
322 331Right-handed alpha
Helix 38
AE2
D
332 356Right-handed alpha
Helix 39
AE3
D
1002 1019Right-handed alpha
Helix 40
AE4
D
1023 1034Right-handed alpha
Helix 41
AE5
D
1039 1065Right-handed alpha
Helix 42
AE6
D
1070 1124Right-handed alpha
Helix 43
AE7
D
1143 1148Right-handed alpha
Helix 44
AE8
D
1164 1181Right-handed alpha
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There are 5 sheets in PDB entry 8ODU. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
29 33first strand
Strand 2
A
234 239parallel
Strand 3
A
266 268parallel
Strand 4
A
307 309parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
90 94first strand
Strand 2
A
58 62parallel
Strand 3
A
152 153parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
29 33first strand
Strand 2
B
234 239parallel
Strand 3
B
266 268parallel
Strand 4
B
307 309parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
91 93first strand
Strand 2
B
58 61parallel
Strand 3
B
152 154parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
1131 1132first strand
Strand 2
D
1155 1156anti-parallel
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