Analysis of interatomic Contacts of Structural Units in PDB entry:
8ODV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8ODV entry

There are 4 chains in PDB entry 8ODV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 14GLU 339
B
 MET 14GLU 339
C
 VAL 300ARG 1181
D
 VAL 300ARG 1181
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 44 helices in PDB entry 8ODV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
18 25Right-handed alpha
Helix 2
AA2
A
39 52Right-handed alpha
Helix 3
AA3
A
53 55Right-handed 310
Helix 4
AA4
A
67 74Right-handed alpha
Helix 5
AA5
A
97 105Right-handed alpha
Helix 6
AA6
A
121 129Right-handed alpha
Helix 7
AA7
A
132 146Right-handed alpha
Helix 8
AA8
A
159 164Right-handed alpha
Helix 9
AA9
A
165 167Right-handed 310
Helix 10
AB1
A
168 185Right-handed alpha
Helix 11
AB2
A
206 229Right-handed alpha
Helix 12
AB3
A
243 259Right-handed alpha
Helix 13
AB4
A
281 303Right-handed alpha
Helix 14
AB5
A
320 330Right-handed alpha
Helix 15
AB6
B
18 25Right-handed alpha
Helix 16
AB7
B
39 52Right-handed alpha
Helix 17
AB8
B
53 55Right-handed 310
Helix 18
AB9
B
67 74Right-handed alpha
Helix 19
AC1
B
97 105Right-handed alpha
Helix 20
AC2
B
121 129Right-handed alpha
Helix 21
AC3
B
132 146Right-handed alpha
Helix 22
AC4
B
159 164Right-handed alpha
Helix 23
AC5
B
165 167Right-handed 310
Helix 24
AC6
B
168 185Right-handed alpha
Helix 25
AC7
B
206 229Right-handed alpha
Helix 26
AC8
B
243 259Right-handed alpha
Helix 27
AC9
B
281 303Right-handed alpha
Helix 28
AD1
B
320 330Right-handed alpha
Helix 29
AD2
C
303 310Right-handed alpha
Helix 30
AD3
C
336 356Right-handed alpha
Helix 31
AD4
C
1002 1019Right-handed alpha
Helix 32
AD5
C
1023 1034Right-handed alpha
Helix 33
AD6
C
1039 1065Right-handed alpha
Helix 34
AD7
C
1070 1124Right-handed alpha
Helix 35
AD8
C
1139 1148Right-handed alpha
Helix 36
AD9
C
1164 1181Right-handed alpha
Helix 37
AE1
D
303 310Right-handed alpha
Helix 38
AE2
D
336 356Right-handed alpha
Helix 39
AE3
D
1002 1019Right-handed alpha
Helix 40
AE4
D
1023 1034Right-handed alpha
Helix 41
AE5
D
1039 1065Right-handed alpha
Helix 42
AE6
D
1070 1124Right-handed alpha
Helix 43
AE7
D
1139 1148Right-handed alpha
Helix 44
AE8
D
1164 1181Right-handed alpha
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There are 2 sheets in PDB entry 8ODV. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
90 92first strand
Strand 2
A
58 60parallel
Strand 3
A
152 154parallel
Strand 4
A
29 33parallel
Strand 5
A
234 239parallel
Strand 6
A
266 268parallel
Strand 7
A
307 309parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
90 92first strand
Strand 2
B
58 60parallel
Strand 3
B
152 154parallel
Strand 4
B
29 33parallel
Strand 5
B
234 239parallel
Strand 6
B
266 268parallel
Strand 7
B
307 309parallel
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