Analysis of interatomic Contacts of Structural Units in PDB entry:
8ODW

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8ODW entry

There are 2 chains in PDB entry 8ODW (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ARG 10	ALA 637
B	LYS 13	PHE 626

There are 63 helices in PDB entry 8ODW. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	21	34	Right-handed alpha
Helix 2	AA2	A	48	52	Right-handed 310
Helix 3	AA3	A	70	75	Right-handed alpha
Helix 4	AA4	A	90	105	Right-handed alpha
Helix 5	AA5	A	107	109	Right-handed 310
Helix 6	AA6	A	162	166	Right-handed 310
Helix 7	AA7	A	174	176	Right-handed 310
Helix 8	AA8	A	178	183	Right-handed 310
Helix 9	AA9	A	193	204	Right-handed alpha
Helix 10	AB1	A	234	240	Right-handed alpha
Helix 11	AB2	A	244	255	Right-handed alpha
Helix 12	AB3	A	255	265	Right-handed alpha
Helix 13	AB4	A	270	277	Right-handed alpha
Helix 14	AB5	A	285	292	Right-handed alpha
Helix 15	AB6	A	332	338	Right-handed 310
Helix 16	AB7	A	344	348	Right-handed alpha
Helix 17	AB8	A	351	353	Right-handed 310
Helix 18	AB9	A	374	391	Right-handed alpha
Helix 19	AC1	A	399	403	Right-handed 310
Helix 20	AC2	A	413	424	Right-handed alpha
Helix 21	AC3	A	433	442	Right-handed alpha
Helix 22	AC4	A	446	452	Right-handed 310
Helix 23	AC5	A	460	473	Right-handed alpha
Helix 24	AC6	A	479	495	Right-handed alpha
Helix 25	AC7	A	495	505	Right-handed alpha
Helix 26	AC8	A	509	519	Right-handed alpha
Helix 27	AC9	A	527	530	Right-handed 310
Helix 28	AD1	A	553	572	Right-handed alpha
Helix 29	AD2	A	574	578	Right-handed 310
Helix 30	AD3	A	583	588	Right-handed 310
Helix 31	AD4	A	590	605	Right-handed alpha
Helix 32	AD5	A	612	617	Right-handed alpha
Helix 33	AD6	A	619	634	Right-handed alpha
Helix 34	AD7	B	21	34	Right-handed alpha
Helix 35	AD8	B	70	74	Right-handed 310
Helix 36	AD9	B	82	86	Right-handed 310
Helix 37	AE1	B	90	105	Right-handed alpha
Helix 38	AE2	B	106	109	Right-handed 310
Helix 39	AE3	B	162	166	Right-handed 310
Helix 40	AE4	B	193	204	Right-handed alpha
Helix 41	AE5	B	234	239	Right-handed alpha
Helix 42	AE6	B	245	250	Right-handed alpha
Helix 43	AE7	B	250	255	Right-handed alpha
Helix 44	AE8	B	255	264	Right-handed alpha
Helix 45	AE9	B	270	277	Right-handed alpha
Helix 46	AF1	B	285	292	Right-handed alpha
Helix 47	AF2	B	344	348	Right-handed alpha
Helix 48	AF3	B	351	353	Right-handed 310
Helix 49	AF4	B	375	391	Right-handed alpha
Helix 50	AF5	B	397	402	Right-handed alpha
Helix 51	AF6	B	412	425	Right-handed alpha
Helix 52	AF7	B	433	441	Right-handed alpha
Helix 53	AF8	B	446	452	Right-handed 310
Helix 54	AF9	B	460	472	Right-handed alpha
Helix 55	AG1	B	481	495	Right-handed alpha
Helix 56	AG2	B	495	505	Right-handed alpha
Helix 57	AG3	B	510	517	Right-handed alpha
Helix 58	AG4	B	518	520	Right-handed 310
Helix 59	AG5	B	528	530	Right-handed 310
Helix 60	AG6	B	566	574	Right-handed alpha
Helix 61	AG7	B	590	603	Right-handed alpha
Helix 62	AG8	B	612	617	Right-handed alpha
Helix 63	AG9	B	619	626	Right-handed alpha

There are 16 sheets in PDB entry 8ODW. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	111	112	first strand
Strand 2	A	37	41	parallel
Strand 3	A	14	18	parallel
Strand 4	A	144	147	parallel
Strand 5	A	361	363	parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	117	123	first strand
Strand 2	A	126	131	anti-parallel
Strand 3	A	138	142	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	169	172	first strand
Strand 2	A	324	327	parallel
Strand 3	A	186	190	parallel
Strand 4	A	209	214	parallel
Strand 5	A	296	299	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	219	221	first strand
Strand 2	A	280	282	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	224	225	first strand
Strand 2	A	228	229	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	302	305	first strand
Strand 2	A	310	312	anti-parallel
Strand 3	A	318	319	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	349	350	first strand
Strand 2	A	354	355	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	369	371	first strand
Strand 2	A	410	412	parallel
Strand 3	A	532	533	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	111	112	first strand
Strand 2	B	37	41	parallel
Strand 3	B	14	17	parallel
Strand 4	B	144	146	parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	117	120	first strand
Strand 2	B	127	131	anti-parallel
Strand 3	B	140	142	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	169	172	first strand
Strand 2	B	324	327	parallel
Strand 3	B	186	190	parallel
Strand 4	B	209	213	parallel
Strand 5	B	296	297	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	219	221	first strand
Strand 2	B	280	282	parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	224	225	first strand
Strand 2	B	228	229	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	302	306	first strand
Strand 2	B	309	312	anti-parallel
Strand 3	B	318	320	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	349	350	first strand
Strand 2	B	354	355	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	369	370	first strand
Strand 2	B	410	411	parallel
Strand 3	B	532	533	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8ODW

Analysis of interatomic Contacts of Structural Units in PDB entry:
8ODW