Analysis of interatomic Contacts of Structural Units in PDB entry:
8ODZ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8ODZ entry

There are 4 chains in PDB entry 8ODZ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ARG 32	SER 214
B	MET 23	CYS 331
C	LEU 46	PHE 560
D	ASP 26	PRO 632

There are 10 helices in PDB entry 8ODZ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	32	55	Right-handed alpha
Helix 2	AA2	A	76	81	Right-handed alpha
Helix 3	AA3	A	83	87	Right-handed 310
Helix 4	AA4	A	108	112	Right-handed 310
Helix 5	AA5	A	115	141	Right-handed alpha
Helix 6	AA6	A	152	167	Right-handed alpha
Helix 7	AA7	A	185	214	Right-handed alpha
Helix 8	AA8	C	463	468	Right-handed alpha
Helix 9	AA9	D	90	92	Right-handed 310
Helix 10	AB1	D	560	565	Right-handed alpha

There are 33 sheets in PDB entry 8ODZ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	24	27	first strand
Strand 2	B	30	32	anti-parallel
Strand 3	B	95	102	parallel
Strand 4	B	86	92	anti-parallel
Strand 5	B	59	62	anti-parallel
Strand 6	B	70	71	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	35	36	first strand
Strand 2	B	106	108	parallel
Strand 3	B	111	112	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	44	49	first strand
Strand 2	B	74	79	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	117	118	first strand
Strand 2	B	136	143	anti-parallel
Strand 3	B	126	129	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	117	118	first strand
Strand 2	B	136	143	anti-parallel
Strand 3	B	182	192	anti-parallel
Strand 4	B	170	179	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	149	150	first strand
Strand 2	B	206	214	anti-parallel
Strand 3	B	153	154	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	149	150	first strand
Strand 2	B	206	214	anti-parallel
Strand 3	B	217	225	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	240	244	first strand
Strand 2	B	248	252	anti-parallel
Strand 3	B	300	303	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	294	296	first strand
Strand 2	B	268	274	anti-parallel
Strand 3	B	315	316	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	294	296	first strand
Strand 2	B	268	274	anti-parallel
Strand 3	B	310	312	anti-parallel
Strand 4	B	327	329	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	60	68	first strand
Strand 2	C	47	56	anti-parallel
Strand 3	C	146	147	parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	94	99	first strand
Strand 2	C	75	82	anti-parallel
Strand 3	C	120	128	anti-parallel
Strand 4	C	131	134	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	94	99	first strand
Strand 2	C	75	82	anti-parallel
Strand 3	C	120	128	anti-parallel
Strand 4	C	138	140	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	156	160	first strand
Strand 2	C	163	169	anti-parallel
Strand 3	C	213	218	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	189	193	first strand
Strand 2	C	177	183	anti-parallel
Strand 3	C	225	232	anti-parallel
Strand 4	C	251	253	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	276	279	first strand
Strand 2	C	328	331	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	320	324	first strand
Strand 2	C	303	310	anti-parallel
Strand 3	C	336	343	anti-parallel
Strand 4	C	352	356	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	368	372	first strand
Strand 2	C	375	379	anti-parallel
Strand 3	C	420	423	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	404	408	first strand
Strand 2	C	389	395	anti-parallel
Strand 3	C	434	441	anti-parallel
Strand 4	C	452	460	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	471	477	first strand
Strand 2	C	483	488	anti-parallel
Strand 3	C	525	528	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	514	519	first strand
Strand 2	C	499	508	anti-parallel
Strand 3	C	537	545	anti-parallel
Strand 4	C	556	558	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	31	36	first strand
Strand 2	D	47	53	anti-parallel
Strand 3	D	94	99	anti-parallel

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There are 5 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	40	41	first strand
Strand 2	D	125	133	parallel
Strand 3	D	106	112	anti-parallel
Strand 4	D	69	74	anti-parallel
Strand 5	D	77	80	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	196	198	first strand
Strand 2	D	154	159	anti-parallel
Strand 3	D	141	148	anti-parallel
Strand 4	D	238	239	parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	180	188	first strand
Strand 2	D	168	176	anti-parallel
Strand 3	D	211	219	anti-parallel
Strand 4	D	230	233	anti-parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	244	250	first strand
Strand 2	D	258	263	anti-parallel
Strand 3	D	294	297	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	284	289	first strand
Strand 2	D	270	277	anti-parallel
Strand 3	D	306	313	anti-parallel
Strand 4	D	328	330	anti-parallel

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There are 3 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	347	348	first strand
Strand 2	D	355	360	anti-parallel
Strand 3	D	397	402	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	387	393	first strand
Strand 2	D	376	382	anti-parallel
Strand 3	D	408	412	anti-parallel
Strand 4	D	424	428	anti-parallel

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There are 3 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	443	448	first strand
Strand 2	D	451	455	anti-parallel
Strand 3	D	497	500	anti-parallel

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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	487	491	first strand
Strand 2	D	468	475	anti-parallel
Strand 3	D	510	517	anti-parallel
Strand 4	D	523	529	anti-parallel

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There are 3 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	544	548	first strand
Strand 2	D	551	555	anti-parallel
Strand 3	D	597	600	anti-parallel

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There are 4 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	585	590	first strand
Strand 2	D	570	577	anti-parallel
Strand 3	D	609	616	anti-parallel
Strand 4	D	628	630	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8ODZ

Analysis of interatomic Contacts of Structural Units in PDB entry:
8ODZ