Analysis of interatomic Contacts of Structural Units in PDB entry:
8OE1


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8OE1 entry

There are 2 chains in PDB entry 8OE1 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 28ALA 293
C
 ASP 28ALA 293
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 32 helices in PDB entry 8OE1. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
28 41Right-handed alpha
Helix 2
AA2
A
69 71Right-handed 310
Helix 3
AA3
A
72 86Right-handed alpha
Helix 4
AA4
A
87 92Right-handed 310
Helix 5
AA5
A
98 102Right-handed 310
Helix 6
AA6
A
108 112Right-handed 310
Helix 7
AA7
A
119 129Right-handed alpha
Helix 8
AA8
A
131 143Right-handed alpha
Helix 9
AA9
A
145 145Right-handed 310
Helix 10
AB1
A
145 155Right-handed alpha
Helix 11
AB2
A
182 195Right-handed alpha
Helix 12
AB3
A
200 213Right-handed alpha
Helix 13
AB4
A
220 225Right-handed alpha
Helix 14
AB5
A
267 271Right-handed 310
Helix 15
AB6
A
277 293Right-handed alpha
Helix 16
AB7
C
29 41Right-handed alpha
Helix 17
AB8
C
69 71Right-handed 310
Helix 18
AB9
C
72 83Right-handed alpha
Helix 19
AC1
C
87 92Right-handed 310
Helix 20
AC2
C
98 102Right-handed 310
Helix 21
AC3
C
108 112Right-handed 310
Helix 22
AC4
C
119 129Right-handed alpha
Helix 23
AC5
C
131 143Right-handed alpha
Helix 24
AC6
C
145 145Right-handed 310
Helix 25
AC7
C
145 155Right-handed alpha
Helix 26
AC8
C
166 170Right-handed 310
Helix 27
AC9
C
174 178Right-handed 310
Helix 28
AD1
C
182 195Right-handed alpha
Helix 29
AD2
C
200 213Right-handed alpha
Helix 30
AD3
C
220 225Right-handed alpha
Helix 31
AD4
C
267 271Right-handed 310
Helix 32
AD5
C
277 293Right-handed alpha
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There are 6 sheets in PDB entry 8OE1. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
57 60first strand
Strand 2
A
43 48anti-parallel
Strand 3
A
258 266anti-parallel
Strand 4
A
244 251anti-parallel
Strand 5
A
230 237anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
66 67first strand
Strand 2
A
180 181anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
94 95first strand
Strand 2
A
117 118anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
57 60first strand
Strand 2
C
43 48anti-parallel
Strand 3
C
258 266anti-parallel
Strand 4
C
244 251anti-parallel
Strand 5
C
230 237anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
66 67first strand
Strand 2
C
180 181anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
94 95first strand
Strand 2
C
117 118anti-parallel
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