Analysis of interatomic Contacts of Structural Units in PDB entry:
8OE4

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8OE4 entry

There are 4 chains in PDB entry 8OE4 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ILE 23	SER 328
B	PRO 28	SER 188
C	GLY 24	PRO 316
D	CYS 24	GLY 541

There are 13 helices in PDB entry 8OE4. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	228	232	Right-handed 310
Helix 2	AA2	B	29	48	Right-handed alpha
Helix 3	AA3	B	78	85	Right-handed alpha
Helix 4	AA4	B	85	105	Right-handed alpha
Helix 5	AA5	B	106	111	Right-handed alpha
Helix 6	AA6	B	119	136	Right-handed alpha
Helix 7	AA7	B	156	187	Right-handed alpha
Helix 8	AA8	C	184	186	Right-handed 310
Helix 9	AA9	D	102	104	Right-handed 310
Helix 10	AB1	D	275	279	Right-handed 310
Helix 11	AB2	D	426	430	Right-handed 310
Helix 12	AB3	D	442	447	Right-handed alpha
Helix 13	AB4	D	469	474	Right-handed 310

There are 28 sheets in PDB entry 8OE4. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	24	27	first strand
Strand 2	A	30	36	anti-parallel
Strand 3	A	95	108	parallel
Strand 4	A	87	92	anti-parallel
Strand 5	A	59	62	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	24	27	first strand
Strand 2	A	30	36	anti-parallel
Strand 3	A	95	108	parallel
Strand 4	A	111	112	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	44	49	first strand
Strand 2	A	74	79	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	117	118	first strand
Strand 2	A	139	146	anti-parallel
Strand 3	A	184	195	anti-parallel
Strand 4	A	168	170	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	130	132	first strand
Strand 2	A	139	146	anti-parallel
Strand 3	A	184	195	anti-parallel
Strand 4	A	174	181	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	152	153	first strand
Strand 2	A	215	216	anti-parallel
Strand 3	A	219	220	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	156	160	first strand
Strand 2	A	208	212	anti-parallel
Strand 3	A	223	227	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	239	245	first strand
Strand 2	A	251	257	anti-parallel
Strand 3	A	295	299	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	271	279	first strand
Strand 2	A	304	312	anti-parallel
Strand 3	A	323	326	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	32	37	first strand
Strand 2	C	48	54	anti-parallel
Strand 3	C	84	89	anti-parallel
Strand 4	C	77	78	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	41	43	first strand
Strand 2	C	112	122	parallel
Strand 3	C	96	104	anti-parallel
Strand 4	C	63	68	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	179	182	first strand
Strand 2	C	141	145	anti-parallel
Strand 3	C	132	136	anti-parallel
Strand 4	C	218	219	parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	170	175	first strand
Strand 2	C	157	164	anti-parallel
Strand 3	C	191	199	anti-parallel
Strand 4	C	204	206	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	170	175	first strand
Strand 2	C	157	164	anti-parallel
Strand 3	C	191	199	anti-parallel
Strand 4	C	210	213	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	223	231	first strand
Strand 2	C	237	244	anti-parallel
Strand 3	C	278	283	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	266	272	first strand
Strand 2	C	251	259	anti-parallel
Strand 3	C	289	298	anti-parallel
Strand 4	C	311	314	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	47	54	first strand
Strand 2	D	59	66	anti-parallel
Strand 3	D	96	100	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	86	92	first strand
Strand 2	D	73	80	anti-parallel
Strand 3	D	111	119	anti-parallel
Strand 4	D	122	124	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	86	92	first strand
Strand 2	D	73	80	anti-parallel
Strand 3	D	111	119	anti-parallel
Strand 4	D	129	131	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	146	151	first strand
Strand 2	D	154	159	anti-parallel
Strand 3	D	196	198	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	182	189	first strand
Strand 2	D	168	175	anti-parallel
Strand 3	D	206	214	anti-parallel
Strand 4	D	229	231	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	242	245	first strand
Strand 2	D	253	260	anti-parallel
Strand 3	D	308	310	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	298	302	first strand
Strand 2	D	281	288	anti-parallel
Strand 3	D	314	322	anti-parallel
Strand 4	D	325	326	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	298	302	first strand
Strand 2	D	281	288	anti-parallel
Strand 3	D	314	322	anti-parallel
Strand 4	D	330	334	anti-parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	346	349	first strand
Strand 2	D	353	359	anti-parallel
Strand 3	D	396	402	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	382	389	first strand
Strand 2	D	365	373	anti-parallel
Strand 3	D	412	421	anti-parallel
Strand 4	D	431	440	anti-parallel

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There are 3 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	450	458	first strand
Strand 2	D	461	467	anti-parallel
Strand 3	D	504	508	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	493	498	first strand
Strand 2	D	478	487	anti-parallel
Strand 3	D	515	524	anti-parallel
Strand 4	D	535	538	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8OE4

Analysis of interatomic Contacts of Structural Units in PDB entry:
8OE4