Analysis of interatomic Contacts of Structural Units in PDB entry:
8OEF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8OEF entry

There is 1 chain in PDB entry 8OEF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 293THR 1336
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 23 helices in PDB entry 8OEF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
293 307Right-handed alpha
Helix 2
AA2
A
309 328Right-handed alpha
Helix 3
AA3
A
340 345Right-handed alpha
Helix 4
AA4
A
364 378Right-handed alpha
Helix 5
AA5
A
413 430Right-handed alpha
Helix 6
AA6
A
432 448Right-handed alpha
Helix 7
AA7
A
458 473Right-handed alpha
Helix 8
AA8
A
490 494Right-handed 310
Helix 9
AA9
A
550 564Right-handed alpha
Helix 10
AB1
A
582 587Right-handed alpha
Helix 11
AB2
A
611 626Right-handed alpha
Helix 12
AB3
A
994 1013Right-handed alpha
Helix 13
AB4
A
1015 1037Right-handed alpha
Helix 14
AB5
A
1081 1090Right-handed alpha
Helix 15
AB6
A
1124 1140Right-handed alpha
Helix 16
AB7
A
1141 1158Right-handed alpha
Helix 17
AB8
A
1169 1184Right-handed alpha
Helix 18
AB9
A
1219 1224Right-handed alpha
Helix 19
AC1
A
1233 1247Right-handed alpha
Helix 20
AC2
A
1265 1270Right-handed alpha
Helix 21
AC3
A
1293 1313Right-handed alpha
Helix 22
AC4
A
1326 1330Right-handed alpha
Helix 23
AC5
A
1331 1336Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 8OEF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
335 338first strand
Strand 2
A
353 358anti-parallel
Strand 3
A
406 411parallel
Strand 4
A
395 400anti-parallel
Strand 5
A
382 388anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
498 502first strand
Strand 2
A
506 510anti-parallel
Strand 3
A
534 538anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
572 573first strand
Strand 2
A
594 595parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1040 1045first strand
Strand 2
A
1060 1065anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il