Analysis of interatomic Contacts of Structural Units in PDB entry:
8OEK


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8OEK entry

There is 1 chain in PDB entry 8OEK (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 532PRO 921
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 10 helices in PDB entry 8OEK. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
590 604Right-handed alpha
Helix 2
AA2
A
611 628Right-handed alpha
Helix 3
AA3
A
632 653Right-handed alpha
Helix 4
AA4
A
658 674Right-handed alpha
Helix 5
AA5
A
677 685Right-handed alpha
Helix 6
AA6
A
689 707Right-handed alpha
Helix 7
AA7
A
749 754Right-handed alpha
Helix 8
AA8
A
762 766Right-handed 310
Helix 9
AA9
A
823 828Right-handed 310
Helix 10
AB1
A
883 887Right-handed 310
Back to top of page

There are 6 sheets in PDB entry 8OEK. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
533 534first strand
Strand 2
A
547 548anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
537 539first strand
Strand 2
A
542 544anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
552 556first strand
Strand 2
A
561 571anti-parallel
Strand 3
A
577 589anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
714 718first strand
Strand 2
A
722 730anti-parallel
Strand 3
A
813 821anti-parallel
Strand 4
A
841 847anti-parallel
Strand 5
A
913 919anti-parallel
Strand 6
A
836 837anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
714 718first strand
Strand 2
A
722 730anti-parallel
Strand 3
A
813 821anti-parallel
Strand 4
A
841 847anti-parallel
Strand 5
A
913 919anti-parallel
Strand 6
A
870 877anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
738 740first strand
Strand 2
A
758 761anti-parallel
Strand 3
A
858 863anti-parallel
Strand 4
A
903 908anti-parallel
Strand 5
A
894 900anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il