Analysis of interatomic Contacts of Structural Units in PDB entry:
8OER

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8OER entry

There are 6 chains in PDB entry 8OER (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 71	GLY 785
B	ALA 71	GLY 785
C	GLY 793	CYS 1252
D	GLY 793	CYS 1252
I	CYS 1333	CYS 1432
J	CYS 1333	CYS 1432

There are 64 helices in PDB entry 8OER. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	197	200	Right-handed 310
Helix 2	AA2	A	213	218	Right-handed alpha
Helix 3	AA3	A	227	235	Right-handed alpha
Helix 4	AA4	A	260	267	Right-handed alpha
Helix 5	AA5	A	272	277	Right-handed 310
Helix 6	AA6	A	280	293	Right-handed alpha
Helix 7	AA7	A	298	313	Right-handed alpha
Helix 8	AA8	A	381	385	Right-handed 310
Helix 9	AA9	A	552	555	Right-handed 310
Helix 10	AB1	A	583	589	Right-handed alpha
Helix 11	AB2	A	606	610	Right-handed 310
Helix 12	AB3	A	611	623	Right-handed alpha
Helix 13	AB4	A	632	637	Right-handed alpha
Helix 14	AB5	A	641	655	Right-handed alpha
Helix 15	AB6	A	657	677	Right-handed alpha
Helix 16	AB7	A	689	694	Right-handed alpha
Helix 17	AB8	A	711	718	Right-handed alpha
Helix 18	AB9	A	720	724	Right-handed 310
Helix 19	AC1	A	750	752	Right-handed 310
Helix 20	AC2	B	197	200	Right-handed 310
Helix 21	AC3	B	213	218	Right-handed alpha
Helix 22	AC4	B	227	235	Right-handed alpha
Helix 23	AC5	B	260	267	Right-handed alpha
Helix 24	AC6	B	268	270	Right-handed 310
Helix 25	AC7	B	271	276	Right-handed alpha
Helix 26	AC8	B	280	293	Right-handed alpha
Helix 27	AC9	B	298	313	Right-handed alpha
Helix 28	AD1	B	552	555	Right-handed 310
Helix 29	AD2	B	583	589	Right-handed alpha
Helix 30	AD3	B	606	610	Right-handed 310
Helix 31	AD4	B	611	623	Right-handed alpha
Helix 32	AD5	B	630	636	Right-handed 310
Helix 33	AD6	B	641	655	Right-handed alpha
Helix 34	AD7	B	657	677	Right-handed alpha
Helix 35	AD8	B	689	694	Right-handed alpha
Helix 36	AD9	B	711	718	Right-handed alpha
Helix 37	AE1	B	750	752	Right-handed 310
Helix 38	AE2	C	820	825	Right-handed alpha
Helix 39	AE3	C	1016	1019	Right-handed 310
Helix 40	AE4	C	1033	1037	Right-handed 310
Helix 41	AE5	C	1047	1055	Right-handed alpha
Helix 42	AE6	C	1069	1074	Right-handed alpha
Helix 43	AE7	C	1074	1086	Right-handed alpha
Helix 44	AE8	C	1087	1089	Right-handed 310
Helix 45	AE9	C	1090	1094	Right-handed 310
Helix 46	AF1	C	1095	1099	Right-handed 310
Helix 47	AF2	C	1102	1116	Right-handed alpha
Helix 48	AF3	C	1120	1140	Right-handed alpha
Helix 49	AF4	D	812	816	Right-handed 310
Helix 50	AF5	D	820	825	Right-handed alpha
Helix 51	AF6	D	853	855	Right-handed 310
Helix 52	AF7	D	1016	1019	Right-handed 310
Helix 53	AF8	D	1047	1055	Right-handed alpha
Helix 54	AF9	D	1069	1074	Right-handed alpha
Helix 55	AG1	D	1074	1086	Right-handed alpha
Helix 56	AG2	D	1087	1094	Right-handed 310
Helix 57	AG3	D	1095	1099	Right-handed 310
Helix 58	AG4	D	1102	1116	Right-handed alpha
Helix 59	AG5	D	1120	1140	Right-handed alpha
Helix 60	AG6	I	1361	1368	Right-handed alpha
Helix 61	AG7	I	1389	1394	Right-handed alpha
Helix 62	AG8	I	1410	1412	Right-handed 310
Helix 63	AG9	J	1361	1367	Right-handed alpha
Helix 64	AH1	J	1389	1394	Right-handed alpha

There are 48 sheets in PDB entry 8OER. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1, AF2, AF3,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	92	94	first strand
Strand 2	A	84	86	anti-parallel
Strand 3	A	76	80	anti-parallel
Strand 4	A	191	195	anti-parallel
Strand 5	A	181	185	anti-parallel
Strand 6	A	173	177	anti-parallel
Strand 7	A	164	167	anti-parallel
Strand 8	A	159	161	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	100	105	first strand
Strand 2	A	114	123	anti-parallel
Strand 3	A	126	136	anti-parallel
Strand 4	A	139	144	anti-parallel
Strand 5	A	147	150	anti-parallel
Strand 6	A	153	154	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	334	339	first strand
Strand 2	A	360	364	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	387	389	first strand
Strand 2	A	392	394	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	399	401	first strand
Strand 2	A	405	410	anti-parallel
Strand 3	A	413	418	anti-parallel

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There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	441	442	first strand
Strand 2	A	432	434	anti-parallel
Strand 3	A	423	428	anti-parallel
Strand 4	A	545	550	anti-parallel
Strand 5	A	534	539	anti-parallel
Strand 6	A	525	529	anti-parallel
Strand 7	A	516	522	anti-parallel
Strand 8	A	511	513	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	447	453	first strand
Strand 2	A	460	468	anti-parallel
Strand 3	A	476	485	anti-parallel
Strand 4	A	490	495	anti-parallel
Strand 5	A	500	502	anti-parallel
Strand 6	A	505	506	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	700	705	first strand
Strand 2	A	729	733	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	738	740	first strand
Strand 2	A	746	748	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	754	756	first strand
Strand 2	A	759	761	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	767	769	first strand
Strand 2	A	772	777	anti-parallel
Strand 3	A	780	784	anti-parallel

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There are 8 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	92	94	first strand
Strand 2	B	84	86	anti-parallel
Strand 3	B	76	80	anti-parallel
Strand 4	B	191	195	anti-parallel
Strand 5	B	181	185	anti-parallel
Strand 6	B	173	177	anti-parallel
Strand 7	B	164	167	anti-parallel
Strand 8	B	159	161	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	100	105	first strand
Strand 2	B	114	123	anti-parallel
Strand 3	B	126	136	anti-parallel
Strand 4	B	139	144	anti-parallel
Strand 5	B	147	150	anti-parallel
Strand 6	B	153	154	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	220	221	first strand
Strand 2	B	224	225	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	334	339	first strand
Strand 2	B	360	364	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	369	371	first strand
Strand 2	B	379	381	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	387	389	first strand
Strand 2	B	392	394	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	399	401	first strand
Strand 2	B	406	410	anti-parallel
Strand 3	B	413	417	anti-parallel

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There are 8 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	440	442	first strand
Strand 2	B	432	434	anti-parallel
Strand 3	B	423	428	anti-parallel
Strand 4	B	545	550	anti-parallel
Strand 5	B	534	539	anti-parallel
Strand 6	B	525	529	anti-parallel
Strand 7	B	516	522	anti-parallel
Strand 8	B	511	513	anti-parallel

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There are 6 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	447	453	first strand
Strand 2	B	460	468	anti-parallel
Strand 3	B	476	485	anti-parallel
Strand 4	B	490	495	anti-parallel
Strand 5	B	500	502	anti-parallel
Strand 6	B	505	507	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	700	705	first strand
Strand 2	B	729	733	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	738	740	first strand
Strand 2	B	746	748	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	754	756	first strand
Strand 2	B	759	761	anti-parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	766	769	first strand
Strand 2	B	772	777	anti-parallel
Strand 3	B	780	784	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	799	801	first strand
Strand 2	C	834	836	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	841	842	first strand
Strand 2	C	850	851	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	857	859	first strand
Strand 2	C	862	864	anti-parallel

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There are 3 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	869	872	first strand
Strand 2	C	875	880	anti-parallel
Strand 3	C	883	886	anti-parallel

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There are 7 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	910	912	first strand
Strand 2	C	902	904	anti-parallel
Strand 3	C	893	898	anti-parallel
Strand 4	C	1010	1014	anti-parallel
Strand 5	C	1000	1004	anti-parallel
Strand 6	C	992	996	anti-parallel
Strand 7	C	985	989	anti-parallel

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There are 5 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	919	923	first strand
Strand 2	C	935	942	anti-parallel
Strand 3	C	952	959	anti-parallel
Strand 4	C	964	967	anti-parallel
Strand 5	C	970	971	anti-parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1166	1168	first strand
Strand 2	C	1196	1198	anti-parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1206	1208	first strand
Strand 2	C	1213	1215	anti-parallel

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There are 2 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1220	1221	first strand
Strand 2	C	1227	1228	anti-parallel

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There are 2 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1244	1245	first strand
Strand 2	C	1250	1251	anti-parallel

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There are 2 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	799	801	first strand
Strand 2	D	834	836	anti-parallel

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There are 2 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	841	842	first strand
Strand 2	D	850	851	anti-parallel

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There are 3 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	869	872	first strand
Strand 2	D	875	880	anti-parallel
Strand 3	D	883	886	anti-parallel

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There are 7 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	910	912	first strand
Strand 2	D	902	904	anti-parallel
Strand 3	D	893	898	anti-parallel
Strand 4	D	1010	1014	anti-parallel
Strand 5	D	1000	1004	anti-parallel
Strand 6	D	992	996	anti-parallel
Strand 7	D	985	989	anti-parallel

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There are 4 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	919	923	first strand
Strand 2	D	935	942	anti-parallel
Strand 3	D	952	959	anti-parallel
Strand 4	D	964	967	anti-parallel

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There are 2 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1166	1168	first strand
Strand 2	D	1196	1198	anti-parallel

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There are 2 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1206	1208	first strand
Strand 2	D	1213	1215	anti-parallel

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There are 2 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1220	1221	first strand
Strand 2	D	1227	1228	anti-parallel

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There are 2 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1244	1245	first strand
Strand 2	D	1250	1251	anti-parallel

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There are 2 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	1334	1340	first strand
Strand 2	I	1425	1431	anti-parallel

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There are 3 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	1356	1360	first strand
Strand 2	I	1404	1408	anti-parallel
Strand 3	I	1397	1400	anti-parallel

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There are 2 strands in AF1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	1379	1382	first strand
Strand 2	I	1420	1423	anti-parallel

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There are 3 strands in AF2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	1334	1340	first strand
Strand 2	J	1420	1431	anti-parallel
Strand 3	J	1378	1382	anti-parallel

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There are 3 strands in AF3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	1356	1360	first strand
Strand 2	J	1404	1408	anti-parallel
Strand 3	J	1397	1400	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8OER

Analysis of interatomic Contacts of Structural Units in PDB entry:
8OER