Analysis of interatomic Contacts of Structural Units in PDB entry:
8OF3


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8OF3 entry

There are 3 chains in PDB entry 8OF3 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS -12THR 292
A
 VAL 294GLY 492
B
 SER -9GLY 132
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 40 helices in PDB entry 8OF3. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
0 10Right-handed alpha
Helix 2
AA2
A
50 71Right-handed alpha
Helix 3
AA3
A
72 90Right-handed alpha
Helix 4
AA4
A
90 103Right-handed alpha
Helix 5
AA5
A
105 127Right-handed alpha
Helix 6
AA6
A
128 130Right-handed 310
Helix 7
AA7
A
164 178Right-handed alpha
Helix 8
AA8
A
190 203Right-handed alpha
Helix 9
AA9
A
216 227Right-handed alpha
Helix 10
AB1
A
238 250Right-handed alpha
Helix 11
AB2
A
251 253Right-handed 310
Helix 12
AB3
A
273 287Right-handed alpha
Helix 13
AB4
A
288 291Right-handed 310
Helix 14
AB5
A
305 319Right-handed alpha
Helix 15
AB6
A
337 354Right-handed alpha
Helix 16
AB7
A
384 389Right-handed alpha
Helix 17
AB8
A
403 412Right-handed alpha
Helix 18
AB9
A
426 437Right-handed alpha
Helix 19
AC1
A
459 461Right-handed 310
Helix 20
AC2
A
468 475Right-handed alpha
Helix 21
AC3
B
0 10Right-handed alpha
Helix 22
AC4
B
50 71Right-handed alpha
Helix 23
AC5
B
72 90Right-handed alpha
Helix 24
AC6
B
90 103Right-handed alpha
Helix 25
AC7
B
105 127Right-handed alpha
Helix 26
AC8
B
128 130Right-handed 310
Helix 27
AC9
B
164 178Right-handed alpha
Helix 28
AD1
B
190 203Right-handed alpha
Helix 29
AD2
B
216 227Right-handed alpha
Helix 30
AD3
B
238 250Right-handed alpha
Helix 31
AD4
B
251 253Right-handed 310
Helix 32
AD5
B
273 287Right-handed alpha
Helix 33
AD6
B
288 291Right-handed 310
Helix 34
AD7
B
305 319Right-handed alpha
Helix 35
AD8
B
337 354Right-handed alpha
Helix 36
AD9
B
384 389Right-handed alpha
Helix 37
AE1
B
403 412Right-handed alpha
Helix 38
AE2
B
426 437Right-handed alpha
Helix 39
AE3
B
459 461Right-handed 310
Helix 40
AE4
B
468 475Right-handed alpha
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There are 10 sheets in PDB entry 8OF3. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
17 19first strand
Strand 2
A
22 24anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
31 35first strand
Strand 2
A
42 47anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
133 135first strand
Strand 2
A
143 150anti-parallel
Strand 3
A
477 484anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
210 212first strand
Strand 2
A
181 184parallel
Strand 3
A
153 157parallel
Strand 4
A
230 236parallel
Strand 5
A
255 259parallel
Strand 6
A
463 464anti-parallel
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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
357 360first strand
Strand 2
A
375 378anti-parallel
Strand 3
A
395 401parallel
Strand 4
A
296 302parallel
Strand 5
A
264 268parallel
Strand 6
A
419 423parallel
Strand 7
A
441 444parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
17 19first strand
Strand 2
B
22 24anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
31 35first strand
Strand 2
B
42 47anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
133 135first strand
Strand 2
B
143 150anti-parallel
Strand 3
B
477 484anti-parallel
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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
210 212first strand
Strand 2
B
181 184parallel
Strand 3
B
153 157parallel
Strand 4
B
230 236parallel
Strand 5
B
255 259parallel
Strand 6
B
463 464anti-parallel
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There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
357 360first strand
Strand 2
B
375 378anti-parallel
Strand 3
B
395 401parallel
Strand 4
B
296 302parallel
Strand 5
B
264 268parallel
Strand 6
B
419 423parallel
Strand 7
B
441 444parallel
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