Analysis of interatomic Contacts of Structural Units in PDB entry:
8OF4

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8OF4 entry

There are 11 chains in PDB entry 8OF4 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 38	ALA 135
B	LYS 20	GLY 102
C	GLY 4	ALA 123
D	LYS 24	LYS 122
E	PRO 38	ALA 135
F	LYS 16	GLY 102
G	ALA 12	LYS 119
H	LYS 24	LYS 122
I	A -72	T 72
J	A -72	T 72
L	PRO 26	ALA 285

There are 47 helices in PDB entry 8OF4. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	44	55	Right-handed alpha
Helix 2	AA2	A	63	76	Right-handed alpha
Helix 3	AA3	A	85	114	Right-handed alpha
Helix 4	AA4	A	120	131	Right-handed alpha
Helix 5	AA5	B	24	29	Right-handed 310
Helix 6	AA6	B	30	41	Right-handed alpha
Helix 7	AA7	B	49	76	Right-handed alpha
Helix 8	AA8	B	82	94	Right-handed alpha
Helix 9	AA9	C	5	11	Right-handed alpha
Helix 10	AB1	C	16	22	Right-handed alpha
Helix 11	AB2	C	26	37	Right-handed alpha
Helix 12	AB3	C	45	73	Right-handed alpha
Helix 13	AB4	C	79	90	Right-handed alpha
Helix 14	AB5	C	90	97	Right-handed alpha
Helix 15	AB6	C	112	116	Right-handed 310
Helix 16	AB7	D	34	46	Right-handed alpha
Helix 17	AB8	D	52	81	Right-handed alpha
Helix 18	AB9	D	87	99	Right-handed alpha
Helix 19	AC1	D	100	120	Right-handed alpha
Helix 20	AC2	E	44	57	Right-handed alpha
Helix 21	AC3	E	63	76	Right-handed alpha
Helix 22	AC4	E	85	114	Right-handed alpha
Helix 23	AC5	E	120	131	Right-handed alpha
Helix 24	AC6	F	24	29	Right-handed 310
Helix 25	AC7	F	30	41	Right-handed alpha
Helix 26	AC8	F	49	76	Right-handed alpha
Helix 27	AC9	F	82	93	Right-handed alpha
Helix 28	AD1	G	16	21	Right-handed alpha
Helix 29	AD2	G	26	37	Right-handed alpha
Helix 30	AD3	G	45	73	Right-handed alpha
Helix 31	AD4	G	79	89	Right-handed alpha
Helix 32	AD5	G	92	97	Right-handed alpha
Helix 33	AD6	G	112	116	Right-handed 310
Helix 34	AD7	H	34	46	Right-handed alpha
Helix 35	AD8	H	52	81	Right-handed alpha
Helix 36	AD9	H	87	99	Right-handed alpha
Helix 37	AE1	H	100	120	Right-handed alpha
Helix 38	AE2	L	27	44	Right-handed alpha
Helix 39	AE3	L	52	58	Right-handed alpha
Helix 40	AE4	L	92	104	Right-handed alpha
Helix 41	AE5	L	117	122	Right-handed alpha
Helix 42	AE6	L	125	127	Right-handed 310
Helix 43	AE7	L	193	206	Right-handed alpha
Helix 44	AE8	L	221	223	Right-handed 310
Helix 45	AE9	L	224	232	Right-handed alpha
Helix 46	AF1	L	246	250	Right-handed 310
Helix 47	AF2	L	257	269	Right-handed alpha

There are 12 sheets in PDB entry 8OF4. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	83	84	first strand
Strand 2	B	80	81	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	118	119	first strand
Strand 2	B	45	46	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	97	98	first strand
Strand 2	G	101	102	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	42	43	first strand
Strand 2	D	85	86	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	77	78	first strand
Strand 2	D	50	51	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	101	102	first strand
Strand 2	F	97	98	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	83	84	first strand
Strand 2	F	80	81	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	118	119	first strand
Strand 2	F	45	46	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	42	43	first strand
Strand 2	H	85	86	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	77	78	first strand
Strand 2	H	50	51	parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	129	131	first strand
Strand 2	L	109	112	parallel
Strand 3	L	47	51	parallel
Strand 4	L	209	213	parallel
Strand 5	L	235	239	parallel
Strand 6	L	252	254	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	139	141	first strand
Strand 2	L	181	183	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8OF4

Analysis of interatomic Contacts of Structural Units in PDB entry:
8OF4