Analysis of interatomic Contacts of Structural Units in PDB entry:
8OF8

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8OF8 entry

There are 13 chains in PDB entry 8OF8 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 2	THR 146
B	ASP 2	THR 146
C	ASP 2	THR 146
D	ASP 2	THR 146
E	ASP 2	THR 146
F	ASP 2	THR 146
J	GLU 4	GLU 72
J	GLY 74	PHE 375
K	GLU 4	GLU 72
K	GLY 74	PHE 375
L	GLU 4	GLU 72
L	GLY 74	PHE 375
M	GLU 5	LYS 915

There are148 helices in PDB entry 8OF8. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	5	20	Right-handed alpha
Helix 2	AA2	A	31	39	Right-handed alpha
Helix 3	AA3	A	44	56	Right-handed alpha
Helix 4	AA4	A	65	77	Right-handed alpha
Helix 5	AA5	A	81	91	Right-handed alpha
Helix 6	AA6	A	102	111	Right-handed alpha
Helix 7	AA7	A	117	129	Right-handed alpha
Helix 8	AA8	A	138	146	Right-handed alpha
Helix 9	AA9	B	5	17	Right-handed alpha
Helix 10	AB1	B	31	39	Right-handed alpha
Helix 11	AB2	B	44	56	Right-handed alpha
Helix 12	AB3	B	65	75	Right-handed alpha
Helix 13	AB4	B	81	93	Right-handed alpha
Helix 14	AB5	B	102	112	Right-handed alpha
Helix 15	AB6	B	117	128	Right-handed alpha
Helix 16	AB7	B	137	146	Right-handed alpha
Helix 17	AB8	C	5	18	Right-handed alpha
Helix 18	AB9	C	31	39	Right-handed alpha
Helix 19	AC1	C	44	53	Right-handed alpha
Helix 20	AC2	C	65	76	Right-handed alpha
Helix 21	AC3	C	81	91	Right-handed alpha
Helix 22	AC4	C	102	111	Right-handed alpha
Helix 23	AC5	C	117	129	Right-handed alpha
Helix 24	AC6	C	138	146	Right-handed alpha
Helix 25	AC7	D	5	17	Right-handed alpha
Helix 26	AC8	D	31	39	Right-handed alpha
Helix 27	AC9	D	44	54	Right-handed alpha
Helix 28	AD1	D	65	75	Right-handed alpha
Helix 29	AD2	D	83	91	Right-handed alpha
Helix 30	AD3	D	102	112	Right-handed alpha
Helix 31	AD4	D	117	129	Right-handed alpha
Helix 32	AD5	D	138	145	Right-handed alpha
Helix 33	AD6	E	5	17	Right-handed alpha
Helix 34	AD7	E	29	39	Right-handed alpha
Helix 35	AD8	E	44	56	Right-handed alpha
Helix 36	AD9	E	65	77	Right-handed alpha
Helix 37	AE1	E	82	91	Right-handed alpha
Helix 38	AE2	E	102	111	Right-handed alpha
Helix 39	AE3	E	117	129	Right-handed alpha
Helix 40	AE4	E	138	146	Right-handed alpha
Helix 41	AE5	F	5	18	Right-handed alpha
Helix 42	AE6	F	30	40	Right-handed alpha
Helix 43	AE7	F	44	54	Right-handed alpha
Helix 44	AE8	F	65	75	Right-handed alpha
Helix 45	AE9	F	81	93	Right-handed alpha
Helix 46	AF1	F	102	112	Right-handed alpha
Helix 47	AF2	F	117	129	Right-handed alpha
Helix 48	AF3	F	138	144	Right-handed alpha
Helix 49	AF4	J	55	61	Right-handed alpha
Helix 50	AF5	J	78	92	Right-handed alpha
Helix 51	AF6	J	97	101	Right-handed 310
Helix 52	AF7	J	112	126	Right-handed alpha
Helix 53	AF8	J	137	145	Right-handed alpha
Helix 54	AF9	J	172	175	Right-handed 310
Helix 55	AG1	J	181	194	Right-handed alpha
Helix 56	AG2	J	195	197	Right-handed 310
Helix 57	AG3	J	202	217	Right-handed alpha
Helix 58	AG4	J	222	233	Right-handed alpha
Helix 59	AG5	J	234	237	Right-handed 310
Helix 60	AG6	J	252	260	Right-handed alpha
Helix 61	AG7	J	261	262	Right-handed 310
Helix 62	AG8	J	263	268	Right-handed 310
Helix 63	AG9	J	273	285	Right-handed alpha
Helix 64	AH1	J	286	288	Right-handed 310
Helix 65	AH2	J	289	296	Right-handed alpha
Helix 66	AH3	J	301	305	Right-handed 310
Helix 67	AH4	J	308	319	Right-handed alpha
Helix 68	AH5	J	332	336	Right-handed 310
Helix 69	AH6	J	337	347	Right-handed alpha
Helix 70	AH7	J	348	356	Right-handed 310
Helix 71	AH8	J	359	366	Right-handed alpha
Helix 72	AH9	J	369	374	Right-handed alpha
Helix 73	AI1	K	55	61	Right-handed alpha
Helix 74	AI2	K	78	92	Right-handed alpha
Helix 75	AI3	K	112	126	Right-handed alpha
Helix 76	AI4	K	137	146	Right-handed alpha
Helix 77	AI5	K	172	175	Right-handed 310
Helix 78	AI6	K	181	194	Right-handed alpha
Helix 79	AI7	K	195	197	Right-handed 310
Helix 80	AI8	K	202	216	Right-handed alpha
Helix 81	AI9	K	222	233	Right-handed alpha
Helix 82	AJ1	K	234	237	Right-handed 310
Helix 83	AJ2	K	252	257	Right-handed alpha
Helix 84	AJ3	K	258	268	Right-handed 310
Helix 85	AJ4	K	273	284	Right-handed alpha
Helix 86	AJ5	K	289	295	Right-handed alpha
Helix 87	AJ6	K	301	305	Right-handed 310
Helix 88	AJ7	K	308	319	Right-handed alpha
Helix 89	AJ8	K	334	336	Right-handed 310
Helix 90	AJ9	K	337	347	Right-handed alpha
Helix 91	AK1	K	348	355	Right-handed 310
Helix 92	AK2	K	359	366	Right-handed alpha
Helix 93	AK3	K	368	374	Right-handed alpha
Helix 94	AK4	L	55	61	Right-handed alpha
Helix 95	AK5	L	78	92	Right-handed alpha
Helix 96	AK6	L	112	126	Right-handed alpha
Helix 97	AK7	L	137	146	Right-handed alpha
Helix 98	AK8	L	172	175	Right-handed 310
Helix 99	AK9	L	181	194	Right-handed alpha
Helix 100	AL1	L	195	197	Right-handed 310
Helix 101	AL2	L	202	217	Right-handed alpha
Helix 102	AL3	L	222	233	Right-handed alpha
Helix 103	AL4	L	252	257	Right-handed alpha
Helix 104	AL5	L	258	268	Right-handed 310
Helix 105	AL6	L	273	285	Right-handed alpha
Helix 106	AL7	L	289	296	Right-handed alpha
Helix 107	AL8	L	301	305	Right-handed 310
Helix 108	AL9	L	308	321	Right-handed alpha
Helix 109	AM1	L	337	347	Right-handed alpha
Helix 110	AM2	L	348	355	Right-handed 310
Helix 111	AM3	L	359	366	Right-handed alpha
Helix 112	AM4	L	368	374	Right-handed alpha
Helix 113	AM5	M	54	58	Right-handed 310
Helix 114	AM6	M	73	77	Right-handed 310
Helix 115	AM7	M	81	97	Right-handed alpha
Helix 116	AM8	M	116	119	Right-handed 310
Helix 117	AM9	M	120	128	Right-handed alpha
Helix 118	AN1	M	131	135	Right-handed 310
Helix 119	AN2	M	138	153	Right-handed alpha
Helix 120	AN3	M	165	167	Right-handed 310
Helix 121	AN4	M	168	184	Right-handed alpha
Helix 122	AN5	M	185	189	Right-handed 310
Helix 123	AN6	M	191	207	Right-handed alpha
Helix 124	AN7	M	245	250	Right-handed 310
Helix 125	AN8	M	259	268	Right-handed alpha
Helix 126	AN9	M	271	278	Right-handed 310
Helix 127	AO1	M	285	290	Right-handed alpha
Helix 128	AO2	M	300	315	Right-handed alpha
Helix 129	AO3	M	318	337	Right-handed alpha
Helix 130	AO4	M	354	365	Right-handed alpha
Helix 131	AO5	M	367	376	Right-handed alpha
Helix 132	AO6	M	392	424	Right-handed alpha
Helix 133	AO7	M	448	480	Right-handed alpha
Helix 134	AO8	M	483	487	Right-handed 310
Helix 135	AO9	M	492	501	Right-handed alpha
Helix 136	AP1	M	504	515	Right-handed alpha
Helix 137	AP2	M	519	532	Right-handed alpha
Helix 138	AP3	M	563	569	Right-handed alpha
Helix 139	AP4	M	573	582	Right-handed alpha
Helix 140	AP5	M	586	592	Right-handed alpha
Helix 141	AP6	M	625	633	Right-handed alpha
Helix 142	AP7	M	634	652	Right-handed alpha
Helix 143	AP8	M	673	684	Right-handed alpha
Helix 144	AP9	M	685	696	Right-handed alpha
Helix 145	AQ1	M	703	711	Right-handed alpha
Helix 146	AQ2	M	712	714	Right-handed 310
Helix 147	AQ3	M	722	735	Right-handed alpha
Helix 148	AQ4	M	753	911	Right-handed alpha

There are 37 sheets in PDB entry 8OF8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	26	28	first strand
Strand 2	A	62	64	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	99	101	first strand
Strand 2	A	135	137	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	26	28	first strand
Strand 2	B	62	64	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	100	101	first strand
Strand 2	B	135	136	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	26	28	first strand
Strand 2	C	62	64	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	99	101	first strand
Strand 2	C	135	137	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	26	28	first strand
Strand 2	D	62	64	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	99	101	first strand
Strand 2	D	135	137	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	26	28	first strand
Strand 2	E	62	64	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	99	101	first strand
Strand 2	E	135	137	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	26	28	first strand
Strand 2	F	62	64	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	99	101	first strand
Strand 2	F	135	137	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	29	32	first strand
Strand 2	J	16	21	anti-parallel
Strand 3	J	8	11	anti-parallel
Strand 4	J	103	107	parallel
Strand 5	J	131	136	parallel
Strand 6	J	357	358	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	53	54	first strand
Strand 2	J	35	38	anti-parallel
Strand 3	J	65	68	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	71	72	first strand
Strand 2	J	75	76	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	176	178	first strand
Strand 2	J	160	166	anti-parallel
Strand 3	J	150	155	anti-parallel
Strand 4	J	297	300	parallel
Strand 5	J	329	330	parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	176	178	first strand
Strand 2	J	160	166	anti-parallel
Strand 3	J	169	170	anti-parallel
Strand 4	L	41	42	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	238	241	first strand
Strand 2	J	247	250	anti-parallel

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There are 6 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	29	32	first strand
Strand 2	K	16	21	anti-parallel
Strand 3	K	8	11	anti-parallel
Strand 4	K	103	107	parallel
Strand 5	K	131	136	parallel
Strand 6	K	357	358	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	53	54	first strand
Strand 2	K	35	38	anti-parallel
Strand 3	K	65	68	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	71	72	first strand
Strand 2	K	75	76	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	169	170	first strand
Strand 2	K	160	166	anti-parallel
Strand 3	K	177	178	anti-parallel

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There are 5 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	169	170	first strand
Strand 2	K	160	166	anti-parallel
Strand 3	K	150	155	anti-parallel
Strand 4	K	296	300	parallel
Strand 5	K	328	330	parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	238	241	first strand
Strand 2	K	247	250	anti-parallel

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There are 6 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	29	32	first strand
Strand 2	L	16	21	anti-parallel
Strand 3	L	8	11	anti-parallel
Strand 4	L	103	107	parallel
Strand 5	L	131	136	parallel
Strand 6	L	357	358	anti-parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	53	54	first strand
Strand 2	L	35	38	anti-parallel
Strand 3	L	65	68	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	71	72	first strand
Strand 2	L	75	76	anti-parallel

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There are 3 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	169	170	first strand
Strand 2	L	160	166	anti-parallel
Strand 3	L	176	178	anti-parallel

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There are 5 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	169	170	first strand
Strand 2	L	160	166	anti-parallel
Strand 3	L	150	155	anti-parallel
Strand 4	L	297	300	parallel
Strand 5	L	329	330	parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	238	241	first strand
Strand 2	L	247	250	anti-parallel

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There are 5 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	45	51	first strand
Strand 2	M	37	42	anti-parallel
Strand 3	M	22	27	anti-parallel
Strand 4	M	12	16	anti-parallel
Strand 5	M	61	62	anti-parallel

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There are 7 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	100	103	first strand
Strand 2	M	106	110	anti-parallel
Strand 3	M	654	661	parallel
Strand 4	M	157	163	parallel
Strand 5	M	431	439	parallel
Strand 6	M	221	228	anti-parallel
Strand 7	M	234	242	anti-parallel

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There are 2 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	208	209	first strand
Strand 2	M	217	218	anti-parallel

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There are 2 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	341	344	first strand
Strand 2	M	347	349	anti-parallel

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There are 2 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	377	381	first strand
Strand 2	M	386	390	anti-parallel

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There are 3 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	538	539	first strand
Strand 2	M	547	551	anti-parallel
Strand 3	M	556	560	anti-parallel

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There are 3 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	699	702	first strand
Strand 2	M	747	750	anti-parallel
Strand 3	M	741	743	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8OF8

Analysis of interatomic Contacts of Structural Units in PDB entry:
8OF8